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Series GSE220492 Query DataSets for GSE220492
Status Public on Jun 08, 2023
Title Transcriptome analysis of BT549 cells overexpressing SNHG15
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary LncRNA SNHG15 is an oncogenic lncRNA in a variety of cancers including breast cancer, lung cancer, and hepatocellular carcinoma. To screen genes regulated by SNHG15, we performed RNA-seq with stable SNHG15-overexpression BT549 cells, using BT549-pcIP2 as control.
 
Overall design This experiment is designed to evaluate differential expression genes through comparing mRNA profiling of SNHG15 overexpressing BT549 cells with vector control. The RNA-Seq experiments and data analysis were performed at the Shanghai Biotechnology Corporation in Shanghai, China
 
Contributor(s) Zhou Y, Chen S, Gu W
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Submission date Dec 08, 2022
Last update date Jun 08, 2023
Contact name Zhou Yanchun
E-mail(s) zyc2013st@foxmail.com
Organization name Shantou University Medical College
Department Pathophysiology
Street address Xinling Road
City Shantou
State/province Guangdong
ZIP/Postal code 515041
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (2)
GSM6805759 BT549-SNHGIS
GSM6805760 BT549--pcIp2
Relations
BioProject PRJNA910072

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE220492_all.counts.BT549-SNHGIS_vs_BT549--pcIp2.edgeR_all.txt.gz 9.2 Mb (ftp)(http) TXT
GSE220492_all.counts.BT549-SNHGIS_vs_BT549--pcIp2.edgeR_differential.txt.gz 899.0 Kb (ftp)(http) TXT
GSE220492_all.counts.BT549-SNHGIS_vs_BT549--pcIp2.edgeR_differential_DOWN.txt.gz 332.0 Kb (ftp)(http) TXT
GSE220492_all.counts.BT549-SNHGIS_vs_BT549--pcIp2.edgeR_differential_UP.txt.gz 570.6 Kb (ftp)(http) TXT
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Processed data are available on Series record

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