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Series GSE220831 Query DataSets for GSE220831
Status Public on Mar 30, 2023
Title Epigenetic and metabolic reprogramming by HDAC inhibition targets NRF2-active tumors [CRISPR Screen]
Organism Mus musculus
Experiment type Other
Summary To identify NRF2-specific dependencies in chromatin regulation, we performed a focused genetic screen mouse LUAD cell lines with or without knock-out of KEAP1.
 
Overall design A chromatin-focused CRISPR/Cas9 dropout screen was performed in 2 KP and 2 KPK cell lines and sgRNA enrichment was assessed by deep-sequencing at 0(t0) and 14(t1) population doublings.
 
Contributor(s) Karagiannis D, Wu W, Sánchez-Rivera FJ, Soto-Feliciano YM, Papagiannakopoulos T
Citation(s) 38165806
Submission date Dec 13, 2022
Last update date Feb 15, 2024
Contact name Dimitris Karagiannis
E-mail(s) karagiannis_dimitrios@yahoo.gr
Phone 3472614743
Organization name Columbia University
Street address 701 W 168th St
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (36)
GSM6820849 KP1_t0_rep1
GSM6820850 KP1_t1_rep1
GSM6820851 KP1_t0_rep2
This SubSeries is part of SuperSeries:
GSE220839 Epigenetic and metabolic reprogramming by HDAC inhibition targets NRF2-active tumors
Relations
BioProject PRJNA911659

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE220831_KPCB_KPKCB_mle_normalized.gene_summary.txt.gz 25.6 Kb (ftp)(http) TXT
GSE220831_KPCB_KPKCB_mle_normalized.sgrna_summary.txt.gz 10.5 Kb (ftp)(http) TXT
GSE220831_KP_KPK_mle_normalized3.gene_summary.txt.gz 27.6 Kb (ftp)(http) TXT
GSE220831_KP_KPK_mle_normalized3.sgrna_summary.txt.gz 10.5 Kb (ftp)(http) TXT
GSE220831_sgRNA_all_raw_counts.txt.gz 194.2 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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