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Series GSE221029 Query DataSets for GSE221029
Status Public on Sep 06, 2023
Title DNA methylation of human FFPE meningioma samples
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary DNA methylation profiling of human FFPE meningioma samples
These samples were processed as part of a study developing and validating a targeted gene expression biomarker of meningioma outcomes and benefit from radiotherapy.
 
Overall design 230 FFPE meningioma samples
 
Contributor(s) Chen WC, Raleigh DR
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Dec 15, 2022
Last update date Sep 07, 2023
Contact name William Chen
Organization name UCSF
Street address 1450 3rd Street, HD 402
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (230)
GSM6840209 Human meningioma, FFPE [RT79]
GSM6840210 Human meningioma, FFPE [RT16]
GSM6840211 Human meningioma, FFPE [RT84]
Relations
BioProject PRJNA912618

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE221029_1731-1732_Raleigh-Methylated_intensities-raw.csv.gz 270.9 Mb (ftp)(http) CSV
GSE221029_1731-1732_Raleigh-P_values.csv.gz 163.9 Mb (ftp)(http) CSV
GSE221029_1731-1732_Raleigh-Unmethylated_intensities-raw.csv.gz 268.4 Mb (ftp)(http) CSV
GSE221029_1731-1732_Raleigh-beta_values-raw.csv.gz 1.0 Gb (ftp)(http) CSV
GSE221029_1737_Raleigh-Methylated_intensities-raw.csv.gz 124.6 Mb (ftp)(http) CSV
GSE221029_1737_Raleigh-P_values.csv.gz 41.9 Mb (ftp)(http) CSV
GSE221029_1737_Raleigh-Unmethylated_intensities-raw.csv.gz 119.5 Mb (ftp)(http) CSV
GSE221029_1737_Raleigh-beta_values-raw.csv.gz 294.5 Mb (ftp)(http) CSV
GSE221029_RAW.tar 3.3 Gb (http)(custom) TAR (of IDAT)
Processed data are available on Series record
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