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Status |
Public on Jul 12, 2023 |
Title |
Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils. |
Organisms |
Homo sapiens; Mus musculus |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
37536952 |
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Submission date |
Dec 20, 2022 |
Last update date |
Aug 07, 2023 |
Contact name |
Alexandra Zezulin |
E-mail(s) |
Alexandra.zezulin@pennmedicine.upenn.edu
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Organization name |
University of Pennsylvania
|
Lab |
Speck Lab
|
Street address |
421 Curie Blvd 544 BRB II/III
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City |
Philadelphia |
ZIP/Postal code |
19104 |
Country |
USA |
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Platforms (3) |
GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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Samples (55)
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This SuperSeries is composed of the following SubSeries:
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GSE221422 |
Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [ATAC-seq] |
GSE221423 |
Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [Human ATAC-seq] |
GSE221424 |
Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [H3K27ac ChIP-seq] |
GSE221425 |
Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [RNA-seq] |
GSE221426 |
Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [dsRNA-seq] |
GSE234846 |
Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [CUT&RUN] |
GSE234847 |
Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [HI-C] |
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Relations |
BioProject |
PRJNA914270 |