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Series GSE221427 Query DataSets for GSE221427
Status Public on Jul 12, 2023
Title Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils.
Organisms Homo sapiens; Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 37536952
Submission date Dec 20, 2022
Last update date Aug 07, 2023
Contact name Alexandra Zezulin
E-mail(s) Alexandra.zezulin@pennmedicine.upenn.edu
Organization name University of Pennsylvania
Lab Speck Lab
Street address 421 Curie Blvd 544 BRB II/III
City Philadelphia
ZIP/Postal code 19104
Country USA
 
Platforms (3)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (55)
GSM6865815 WT_PMN_ATAC_A
GSM6865816 WT_PMN_ATAC_B
GSM6865817 KO_PMN_ATAC_A
This SuperSeries is composed of the following SubSeries:
GSE221422 Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [ATAC-seq]
GSE221423 Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [Human ATAC-seq]
GSE221424 Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils [H3K27ac ChIP-seq]
Relations
BioProject PRJNA914270

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE221427_RAW.tar 7.7 Gb (http)(custom) TAR (of BED, BW, MATRIX)
SRA Run SelectorHelp

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