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Series GSE221713 Query DataSets for GSE221713
Status Public on Nov 28, 2023
Title Retinoic Acid Receptor β Loss in Hepatocytes Increases Steatosis and Elevates the Integrated Stress Response in Alcohol-Associated Liver Disease
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Background & Aims: Alcohol-associated liver disease (ALD) is associated with loss of vitamin A (retinoids), increased steatosis, and greater oxidative stress. Although a strong correlation has been observed between loss of retinoids and ALD, if retinoid loss plays a causal role in the pathophysiology of ALD is not clear. Approach & Results: Based on our prior published data indicating that a selective retinoic acid receptor beta (RARβ) agonist limits nonalcohol-related liver disease (NAFLD) pathology, we generated AlbCre;RARβ knockout (BKO) mice and fed these mice a Lieber DeCarli ethanol diet (ETOH). We also generated cultured human hepatocytes (HepG2) that lack RARβ (RARβ-KO) and treated them with ETOH. Here we show that the livers of BKO mice develop greater steatosis, oxidative stress (assessed by 4-HNE), cell proliferation, and hypertrophy on the ETOH diet when compared to wild type (WT). Compared to ETOH-WT mice, the ETOH-BKO mice also exhibit higher hepatic transcript levels of ATF4, MYC, a subset of integrated stress response (ISR) genes (Trib3, Asns, Nqo1, and Hmox1), and the common ATF4 and MYC target, 4EBP1(EIF4EBP1). In RARβ-KO HepG2 cells, ETOH treatments (24 and 72h) resulted in more rapid and greater development of reactive oxygen species compared to parental HepG2. Notably, even without ETOH, ATF4 protein was higher in the RARβ-KO than in parental HepG2. Conclusions: Our research identifies hepatocyte RARβ as a crucial negative regulator of oxidative stress, MYC, ATF4, and proliferation in ALD.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for mouse liver tissue of females C57Bl/6 mice treated with an ethanol-based diet and a matched control diet.
 
Contributor(s) Melis M, Trasino SE, Tang X, Rappa A, Zhang T, Qin L, Gudas LJ
Citation(s) 37569418
Submission date Dec 24, 2022
Last update date Nov 28, 2023
Contact name Lorraine J Gudas
E-mail(s) ljgudas@med.cornell.edu
Phone (212) 746-6254
Organization name Weill Cornell Medicine
Department Pharmacology
Street address 1300 York Ave E405
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM6893644 liver tissue ethanol-fed 3weeks, rep1
GSM6893645 liver tissue ethanol-fed 3weeks, rep2
GSM6893646 liver tissue ethanol-fed 3weeks, rep3
Relations
BioProject PRJNA915600

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Supplementary file Size Download File type/resource
GSE221713_RNA_Seq.xls.gz 1.6 Mb (ftp)(http) XLS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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