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Series GSE222751 Query DataSets for GSE222751
Status Public on Aug 07, 2023
Title Pseudouridine in small RNAs
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Other
Non-coding RNA profiling by high throughput sequencing
Summary Pseudouridine is an isomer of uridine and is the most common RNA modification in both procaryotes and eucaryotes. It is found in ribosomal, transfer, and other structural RNA as well as in some mRNA and non-coding RNA. We have found abundant pseudouridine in small RNA and their precursors in Arabidopsis.
 
Overall design Identification of pseudouridylated small RNAs and their precursors in Arabidopsis thaliana
 
Contributor(s) Dolata J, Herridge RP, Martienssen RA
Citation(s) 37398006
BioProject PRJNA917260
Submission date Jan 12, 2023
Last update date Aug 08, 2023
Contact name Jakub Jacek Dolata
E-mail(s) j.dolata@amu.edu.pl
Organization name Adam Mickiewicz University
Department Department of Gene Expression
Street address Uniwersytetu Poznanskiego 6
City Poznan
ZIP/Postal code 61-614
Country Poland
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (68)
GSM6930601 WT_inflorescence_CMC+_Mg_rep1
GSM6930602 WT_inflorescence_CMC-_Mg_rep1
GSM6930603 WT_inflorescence_CMC+_Mn_rep1

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE222751_RAW.tar 1.7 Gb (http)(custom) TAR (of BED, CSV, SF, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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