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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 13, 2023 |
| Title |
mouse RNA-seq, human RNA-seq, ATAC-seq, and scRNA-seq analyses data |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
36862552 |
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| Submission date |
Feb 07, 2023 |
| Last update date |
Jan 03, 2024 |
| Contact name |
Kenichi Asano |
| E-mail(s) |
asanok@toyaku.ac.jp
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| Organization name |
Tokyo University of Pharmacy and Life Sciences
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| Department |
Life Sciences
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| Lab |
Immune Regulation
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| Street address |
1432-1 Horinouchi
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| City |
Hachioji |
| State/province |
Tokyo |
| ZIP/Postal code |
1920392 |
| Country |
Japan |
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| Platforms (3) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (45)
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| GSM7011864 |
proNeu1, bio rep 2 [ATAc-seq] |
| GSM7011865 |
proNeu2, bio rep 1 [ATAc-seq] |
| GSM7011866 |
proNeu2, bio rep 2 [ATAc-seq] |
| GSM7011867 |
GMP-MoP, bio rep 1 [ATAc-seq] |
| GSM7011868 |
GMP-MoP, bio rep 2 [ATAc-seq] |
| GSM7011869 |
Neutrophil |
| GSM7011870 |
CXCR1+CD14+ monocyte |
| GSM7011871 |
CXCR1-CD14+ monocyte |
| GSM7011872 |
CD14-CD16+ monocyte |
| GSM7011873 |
CD14+CD16+ monocyte |
| GSM7011874 |
Naïve MDP, bio rep 1 |
| GSM7011875 |
Naïve MDP, bio rep 2 |
| GSM7011876 |
Naïve MDP, bio rep 3 |
| GSM7011877 |
Naïve cMoP, bio rep 1 |
| GSM7011878 |
Naïve cMoP, bio rep 2 |
| GSM7011879 |
Naïve cMoP, bio rep 3 |
| GSM7011880 |
Naïve GMP, bio rep 1 |
| GSM7011881 |
Naïve GMP, bio rep 2 |
| GSM7011882 |
Naïve GMP, bio rep 3 |
| GSM7011883 |
Naïve proNeu1, bio rep 1 |
| GSM7011884 |
Naïve proNeu1, bio rep 2 |
| GSM7011885 |
Naïve proNeu1, bio rep 3 |
| GSM7011886 |
Naïve proNeu2, bio rep 1 |
| GSM7011887 |
Naïve proNeu2, bio rep 2 |
| GSM7011888 |
Naïve proNeu2, bio rep 3 |
| GSM7011889 |
Naïve GMP-MoP, bio rep 1 |
| GSM7011890 |
Naïve GMP-MoP, bio rep 2 |
| GSM7011891 |
Naïve GMP-MoP, bio rep 3 |
| GSM7011892 |
LPS GMP, bio rep 1 |
| GSM7011893 |
LPS GMP, bio rep 2 |
| GSM7011894 |
LPS GMP, bio rep 3 |
| GSM7011895 |
LPS proNeu1, bio rep 1 |
| GSM7011896 |
LPS proNeu1, bio rep 2 |
| GSM7011897 |
LPS proNeu1, bio rep 3 |
| GSM7011898 |
LPS proNeu2, bio rep 1 |
| GSM7011899 |
LPS proNeu2, bio rep 2 |
| GSM7011900 |
LPS proNeu2, bio rep 3 |
| GSM7011901 |
LPS GMP-MoP, bio rep 1 |
| GSM7011902 |
LPS GMP-MoP, bio rep 2 |
| GSM7011903 |
LPS GMP-MoP, bio rep 3 |
| GSM7029810 |
BM progenitor cells, mRNA-derived cDNA [AsanoWTA1] |
| GSM7029811 |
BM progenitor cells, HTO-derived cDNA [AsanoTag1] |
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| This SuperSeries is composed of the following SubSeries:
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| GSE224100 |
The chromatin structures of GMP-MoPs are shifted toward ones that favors an aberrant differentiation pathway generating GMP-MoPs from proNeu1 [ATAC-seq] |
| GSE224101 |
Human CXCR1+CD14+ monocytes are characterized by neutrophil-associated gene expression [RNA-seq human] |
| GSE224102 |
GMP-MoPs display mixed gene expression profiles of both neutrophil and monocyte progenitors [RNAseq mouse] |
| GSE224701 |
GMP-MoPs can be classified as an independent cell type that differentiate from GMPs through proNeu1 without going through the MDP-cMoP pathway [scRNA-seq] |
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| Relations |
| BioProject |
PRJNA932220 |
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