|
| Status |
Public on Mar 15, 2023 |
| Title |
Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| Web link |
https://www.biorxiv.org/content/10.1101/2023.03.14.532599v1
|
| |
|
| Citation(s) |
37683092 |
| Submission date |
Feb 07, 2023 |
| Last update date |
Jan 02, 2024 |
| Contact name |
Aleksandra Kornienko |
| E-mail(s) |
kornienkoalexandra@gmail.com
|
| Phone |
00431790449000
|
| Organization name |
Gregor Mendel Institute
|
| Lab |
Nordborg
|
| Street address |
Dr. Bohrgasse 3
|
| City |
Vienna |
| State/province |
Vienna |
| ZIP/Postal code |
1030 |
| Country |
Austria |
| |
|
| Platforms (3) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
| GPL24270 |
NextSeq 550 (Arabidopsis thaliana) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
|
| Samples (453)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE224571 |
Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing [smallRNAseq] |
| GSE224760 |
Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing [lncRNA] |
| GSE226560 |
Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing [Bisulfite-seq] |
| GSE226682 |
Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing [ChIP-Seq] |
| GSE226691 |
Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing [RNA-Seq] |
|
| Relations |
| BioProject |
PRJNA932427 |
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