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GEO accession:
Series GSE224850
Query DataSets for GSE224850
Status
Public on May 01, 2024
Title
H1FOO-DD promotes efficiency and uniformity in reprogramming to naive pluripotency
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
38701780
Submission date
Feb 08, 2023
Last update date
Jun 06, 2024
Contact name
Akira Kunitomi
E-mail(s)
akira.kunitomi@gladstone.ucsf.edu
Organization name
The J. David Gladstone Institutes
Street address
1650 Owens Street
City
San Francisco
State/province
CA
ZIP/Postal code
94158
Country
USA
Platforms (6)
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GPL13534
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL21145
Infinium MethylationEPIC
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL34118
Infinium OmniExpress-24v1.4
Samples (168)
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GSM7029672
Primed OSKL iPSC_1 (Methylation)
GSM7029673
Primed OSKL iPSC_2 (Methylation)
GSM7029674
Primed OSKL iPSC_3 (Methylation)
GSM7029675
Primed OSKL iPSC_4 (Methylation)
GSM7029676
Primed OSKL iPSC_5 (Methylation)
GSM7029677
Primed OSKL iPSC_6 (Methylation)
GSM7029678
Primed OSKL iPSC_7 (Methylation)
GSM7029679
Primed OSKL iPSC_8 (Methylation)
GSM7029680
Primed OSKLH iPSC_1 (Methylation)
GSM7029681
Primed OSKLH iPSC_2 (Methylation)
GSM7029682
Primed OSKLH iPSC_3 (Methylation)
GSM7029683
Primed OSKLH iPSC_4 (Methylation)
GSM7029684
Primed OSKLH iPSC_5 (Methylation)
GSM7029685
Primed OSKLH iPSC_6 (Methylation)
GSM7029686
Primed OSKLH iPSC_7 (Methylation)
GSM7029687
Primed OSKLH iPSC_8 (Methylation)
GSM7029688
Primed H9 ESC (Methylation)
GSM7029689
KhES1 (Methylation)
GSM7029690
201B7 (Methylation)
GSM7029691
Naive H9 ESC (Methylation)
GSM7029692
Naive OSKL iPSC_1 (Methylation)
GSM7029693
Naive OSKL iPSC_2 (Methylation)
GSM7029694
Naive OSKL iPSC_3 (Methylation)
GSM7029695
Naive OSKL iPSC_4 (Methylation)
GSM7029696
Naive OSKL iPSC_5 (Methylation)
GSM7029697
Naive OSKL iPSC_6 (Methylation)
GSM7029698
Naive OSKLH iPSC_1 (Methylation)
GSM7029699
Naive OSKLH iPSC_2 (Methylation)
GSM7029700
Naive OSKLH iPSC_3 (Methylation)
GSM7029701
Naive OSKLH iPSC_4 (Methylation)
GSM7029702
Naive OSKLH iPSC_5 (Methylation)
GSM7029703
Naive OSKLH iPSC_6 (Methylation)
GSM7029704
Primed MOI15 iPSC_1 (Methylation)
GSM7029705
Primed MOI15 iPSC_2 (Methylation)
GSM7029706
Primed MOI15 iPSC_3 (Methylation)
GSM7029707
Primed MOI15 iPSC_4 (Methylation)
GSM7029708
Primed MOI15 iPSC_5 (Methylation)
GSM7029709
Primed MOI15 iPSC_6 (Methylation)
GSM7029710
Primed MOI15 iPSC_7 (Methylation)
GSM7029711
Primed MOI15 iPSC_8 (Methylation)
GSM7029712
Primed MOI75 iPSC_1 (Methylation)
GSM7029713
Primed MOI75 iPSC_2 (Methylation)
GSM7029714
Primed MOI75 iPSC_3 (Methylation)
GSM7029715
Primed MOI75 iPSC_4 (Methylation)
GSM7029716
Primed MOI75 iPSC_5 (Methylation)
GSM7029717
Primed MOI75 iPSC_6 (Methylation)
GSM7029718
Primed MOI75 iPSC_7 (Methylation)
GSM7029719
Primed MOI75 iPSC_8 (Methylation)
GSM7029720
Primed OSKL iPSC_1 (bulkRNA-seq)
GSM7029721
Primed OSKL iPSC_2 (bulkRNA-seq)
GSM7029722
Primed OSKL iPSC_3 (bulkRNA-seq)
GSM7029723
Primed OSKL iPSC_4 (bulkRNA-seq)
GSM7029724
Primed OSKL iPSC_5 (bulkRNA-seq)
GSM7029725
Primed OSKL iPSC_6 (bulkRNA-seq)
GSM7029726
Primed OSKL iPSC_7 (bulkRNA-seq)
GSM7029727
Primed OSKL iPSC_8 (bulkRNA-seq)
GSM7029728
Primed OSKLH iPSC_1 (bulkRNA-seq)
GSM7029729
Primed OSKLH iPSC_2 (bulkRNA-seq)
GSM7029730
Primed OSKLH iPSC_3 (bulkRNA-seq)
GSM7029731
Primed OSKLH iPSC_4 (bulkRNA-seq)
GSM7029732
Primed OSKLH iPSC_5 (bulkRNA-seq)
GSM7029733
Primed OSKLH iPSC_6 (bulkRNA-seq)
GSM7029734
Primed OSKLH iPSC_7 (bulkRNA-seq)
GSM7029735
Primed OSKLH iPSC_8 (bulkRNA-seq)
GSM7029736
Primed H9 ESC (bulkRNA-seq)
GSM7029737
KhES1 (bulkRNA-seq)
GSM7029738
201B7 (bulkRNA-seq)
GSM7029739
Naive H9 ESC (bulkRNA-seq)
GSM7029740
Naive OSKL iPSC_1 (bulkRNA-seq)
GSM7029741
Naive OSKL iPSC_2 (bulkRNA-seq)
GSM7029742
Naive OSKL iPSC_3 (bulkRNA-seq)
GSM7029743
Naive OSKL iPSC_4 (bulkRNA-seq)
GSM7029744
Naive OSKL iPSC_5 (bulkRNA-seq)
GSM7029745
Naive OSKL iPSC_6 (bulkRNA-seq)
GSM7029746
Naive OSKLH iPSC_1 (bulkRNA-seq)
GSM7029747
Naive OSKLH iPSC_2 (bulkRNA-seq)
GSM7029748
Naive OSKLH iPSC_3 (bulkRNA-seq)
GSM7029749
Naive OSKLH iPSC_4 (bulkRNA-seq)
GSM7029750
Naive OSKLH iPSC_5 (bulkRNA-seq)
GSM7029751
Naive OSKLH iPSC_6 (bulkRNA-seq)
GSM7029752
Primed MOI15 iPSC_1 (bulkRNA-seq)
GSM7029753
Primed MOI15 iPSC_2 (bulkRNA-seq)
GSM7029754
Primed MOI15 iPSC_3 (bulkRNA-seq)
GSM7029755
Primed MOI15 iPSC_4 (bulkRNA-seq)
GSM7029756
Primed MOI15 iPSC_5 (bulkRNA-seq)
GSM7029757
Primed MOI15 iPSC_6 (bulkRNA-seq)
GSM7029758
Primed MOI15 iPSC_7 (bulkRNA-seq)
GSM7029759
Primed MOI15 iPSC_8 (bulkRNA-seq)
GSM7029760
Primed MOI75 iPSC_1 (bulkRNA-seq)
GSM7029761
Primed MOI75 iPSC_2 (bulkRNA-seq)
GSM7029762
Primed MOI75 iPSC_3 (bulkRNA-seq)
GSM7029763
Primed MOI75 iPSC_4 (bulkRNA-seq)
GSM7029764
Primed MOI75 iPSC_5 (bulkRNA-seq)
GSM7029765
Primed MOI75 iPSC_6 (bulkRNA-seq)
GSM7029766
Primed MOI75 iPSC_7 (bulkRNA-seq)
GSM7029767
Primed MOI75 iPSC_8 (bulkRNA-seq)
GSM7029768
BJ (bulkRNA-seq)
GSM7029769
TIG113 (bulkRNA-seq)
GSM7029770
TIG120 (bulkRNA-seq)
GSM7029771
BJ_OSKL_day1 (bulkRNA-seq)
GSM7029772
TIG113_OSKL_day1 (bulkRNA-seq)
GSM7029773
TIG120_OSKL_day1 (bulkRNA-seq)
GSM7029774
BJ_OSKLH_day1 (bulkRNA-seq)
GSM7029775
TIG113_OSKLH_day1 (bulkRNA-seq)
GSM7029776
TIG120_OSKLH_day1 (bulkRNA-seq)
GSM7029777
BJ_OSKL_day2 (bulkRNA-seq)
GSM7029778
TIG113_OSKL_day2 (bulkRNA-seq)
GSM7029779
TIG120_OSKL_day2 (bulkRNA-seq)
GSM7029780
BJ_OSKLH_day2 (bulkRNA-seq)
GSM7029781
TIG113_OSKLH_day2 (bulkRNA-seq)
GSM7029782
TIG120_OSKLH_day2 (bulkRNA-seq)
GSM7029783
BJ_OSKL_day5 (bulkRNA-seq)
GSM7029784
TIG113_OSKL_day5 (bulkRNA-seq)
GSM7029785
TIG120_OSKL_day5 (bulkRNA-seq)
GSM7029786
BJ_OSKLH_day5 (bulkRNA-seq)
GSM7029787
TIG113_OSKLH_day5 (bulkRNA-seq)
GSM7029788
TIG120_OSKLH_day5 (bulkRNA-seq)
GSM7029789
H9_ESC
GSM7029790
HDF
GSM7029791
OSKL_day2
GSM7029792
OSKL_day5
GSM7029793
OSKL_day15
GSM7029794
OSKLH_day2
GSM7029795
OSKLH_day5
GSM7029796
OSKLH_day15
GSM7029797
HDF (scRNA-seq)
GSM7029798
OSKL_day5 (scRNA-seq)
GSM7029799
OSKL_day15 (scRNA-seq)
GSM7029800
Primed OSKL iPSC_1 (scRNA-seq)
GSM7029801
Primed OSKL iPSC_2 (scRNA-seq)
GSM7029802
Primed OSKL iPSC_3 (scRNA-seq)
GSM7029803
Primed OSKL iPSC_4 (scRNA-seq)
GSM7029804
OSKLH_day5 (scRNA-seq)
GSM7029805
OSKLH_day15 (scRNA-seq)
GSM7029806
Primed OSKLH iPSC_1 (scRNA-seq)
GSM7029807
Primed OSKLH iPSC_2 (scRNA-seq)
GSM7029808
Primed OSKLH iPSC_3 (scRNA-seq)
GSM7029809
Primed OSKLH iPSC_4 (scRNA-seq)
GSM8030503
t2iLGö+Y_OSKL_1
GSM8030504
t2iLGö+Y_OSKL_2
GSM8030505
t2iLGö+Y_OSKL_3
GSM8030506
t2iLGö+Y_OSKLH_1
GSM8030507
t2iLGö+Y_OSKLH_2
GSM8030508
t2iLGö+Y_OSKLH_3
GSM8030509
PXGLY_OSKL_1
GSM8030510
PXGLY_OSKL_2
GSM8030511
PXGLY_OSKL_3
GSM8030512
PXGLY_OSKLH_1
GSM8030513
PXGLY_OSKLH_2
GSM8030514
PXGLY_OSKLH_3
GSM8030515
t2iLGö+Y_to_PXGLY_OSKL_1
GSM8030516
t2iLGö+Y_to_PXGLY_OSKL_2
GSM8030517
t2iLGö+Y_to_PXGLY_OSKL_3
GSM8030518
t2iLGö+Y_to_PXGLY OSKLH_1
GSM8030519
t2iLGö+Y_to_PXGLY_OSKLH_2
GSM8030520
t2iLGö+Y_to_PXGLY_OSKLH_3
GSM8030521
t2iLGö+Y_to_AXGY_OSKL_1
GSM8030522
t2iLGö+Y_to_AXGY_OSKL_2
GSM8030523
t2iLGö+Y_to_AXGY_OSKL_3
GSM8030524
t2iLGö+Y_to_AXGY_OSKLH_1
GSM8030525
t2iLGö+Y_to_AXGY_OSKLH_2
GSM8030526
t2iLGö+Y_to_AXGY_OSKLH_3
GSM8030527
5iLA_to_AXGY_OSKL_1
GSM8030528
5iLA_to_AXGY_OSKL_2
GSM8030529
5iLA_to_AXGY_OSKL_3
GSM8030530
5iLA_to_AXGY_OSKLH_1
GSM8030531
5iLA_to_AXGY_OSKLH_2
GSM8030532
5iLA_to_AXGY_OSKLH_3
This SuperSeries is composed of the following SubSeries:
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GSE224697
DNA methylation analysis of human primed and naive pluripotent stem cells
GSE224698
Gene expression profiles of human dermal fibroblasts and human pluripotent stem cells analyzed by bulk RNA-seq
GSE224699
Single cell ATAC-seq analysis of human dermal fibroblasts and human pluripotent stem cells
GSE224700
Single cell RNA-seq analysis of human dermal fibroblasts and human pluripotent stem cells
GSE253926
SNP genotyping array of human naive pluripotent stem cells II
Relations
BioProject
PRJNA932791
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File type/resource
GSE224850_RAW.tar
3.0 Gb
(http)
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TAR (of BED, IDAT, MTX, TSV, TXT)
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