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Series GSE22511 Query DataSets for GSE22511
Status Public on Jul 01, 2010
Title Genome-wide transcription start site determination of Geobacter sulfurreducens under multiple growth conditions
Organism Geobacter sulfurreducens PCA
Experiment type Expression profiling by high throughput sequencing
Summary Determine the transcription start sites at 1-bp resolution across the entire G. sulfurreducens genome in multiple growth conditions, including fresh water acetate-fumarate (FWAF) medium, nitrogen limitation and growth on electrode.
 
Overall design Special capture of the 5' end of primary transcripts in G. sulfurreducens and sequencing with Illumina Genome Analyzer II.
 
Contributor(s) Qiu Y, Cho B, Park Y, Lovley D, Palsson BO, Zengler K
Citation(s) 20592237
Submission date Jun 22, 2010
Last update date May 15, 2019
Contact name Bernhard Palsson
E-mail(s) palsson@ucsd.edu
Phone 858-534-5668
Fax 858-822-3120
URL http://systemsbiology.ucsd.edu
Organization name UCSD
Department Bioengineering
Lab Systems Biology Research Group
Street address 9500 Gilman Dr.
City La Jolla
State/province CA
ZIP/Postal code 92122
Country USA
 
Platforms (1)
GPL10638 Illumina Genome Analyzer II (Geobacter sulfurreducens PCA)
Samples (3)
GSM561870 TSS_electrode
GSM561871 TSS_FWAF_logphase
GSM561872 TSS_N2_logphase
This SubSeries is part of SuperSeries:
GSE22512 Analysis of Geobacter sulfurreducens under multiple growth conditions
Relations
SRA SRP002813
BioProject PRJNA129079

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE22511_RAW.tar 12.4 Mb (http)(custom) TAR (of BED, WIG)
GSE22511_readme.txt 693 b (ftp)(http) TXT
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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