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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 03, 2023 |
| Title |
A nucleosome switch primes Hepatitis B Virus infection |
| Organisms |
Homo sapiens; Hepatitis B virus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Feb 21, 2023 |
| Last update date |
Jun 21, 2024 |
| Contact name |
Andres Mansisidor |
| E-mail(s) |
mansisidor@nyu.edu, mansisidor@rockefeller.edu, amansisi@stevens.edu
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| Organization name |
Rockefeller University
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| Department |
Laboratory of Genome Architecture and Dynamics
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| Lab |
Risca
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| Street address |
1230 York Ave Box 176
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
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| Platforms (3) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
| GPL30882 |
NextSeq 1000 (Homo sapiens) |
| GPL33150 |
NextSeq 1000 (Hepatitis B virus) |
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| Samples (101)
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| GSM7054593 |
RNA-seq, HEK293T cells, mock transfection, t0, Replicate1 |
| GSM7054594 |
RNA-seq, HEK293T cells, mock transfection, t0, Replicate2, removed |
| GSM7054595 |
RNA-seq, HEK293T cells, mock transfection, t0, Replicate3 |
| GSM7054596 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t04, Replicate1 |
| GSM7054597 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t04, Replicate2 |
| GSM7054598 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t04, Replicate3 |
| GSM7054599 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t08, Replicate1 |
| GSM7054600 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t08, Replicate2 |
| GSM7054601 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t08, Replicate3 |
| GSM7054602 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t12, Replicate1 |
| GSM7054603 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t12, Replicate2 |
| GSM7054604 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t12, Replicate3 |
| GSM7054605 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t24, Replicate1 |
| GSM7054606 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t24, Replicate2 |
| GSM7054607 |
RNA-seq, HEK293T cells, HBV cccDNA transfection, t24, Replicate3 |
| GSM7054608 |
MNase-seq, HBV cccDNA, Empty, In vitro Experiment1 |
| GSM7054609 |
MNase-seq,HBV cccDNA loaded with reconstituted nucleosomes, In vitro Experiment1 |
| GSM7054610 |
MNase-seq,HBV dslDNA loaded with reconstituted nucleosomes, In vitro Experiment1 |
| GSM7054611 |
MNase-seq,HBV cccDNA, Empty, In vitro Experiment 2 |
| GSM7054612 |
MNase-seq,HBV cccDNA, undersaturated nucleosomes, In vitro Experiment 2 |
| GSM7054613 |
MNase-seq,HBV cccDNA, intermediate nucleosomes, In vitro Experiment 2 |
| GSM7054614 |
MNase-seq,HBV cccDNA, saturated nucleosomes, In vitro Experiment 2 |
| GSM7054615 |
MNase-seq,HEK293T cells, mock transfection, t0, 0250U |
| GSM7054616 |
MNase-seq,HEK293T cells, mock transfection, t0, 0500U |
| GSM7054617 |
MNase-seq,HEK293T cells, mock transfection, t0, 1000U |
| GSM7054618 |
MNase-seq,HEK293T cells, mock transfection, t0, 2000U |
| GSM7054619 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t04, 0250U |
| GSM7054620 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t04, 0500U |
| GSM7054621 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t04, 1000U |
| GSM7054622 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t04, 2000U |
| GSM7054623 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t24, 0250U |
| GSM7054624 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t24, 0500U |
| GSM7054625 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t24, 1000U |
| GSM7054626 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t24, 2000U |
| GSM7054627 |
MNase-seq, HBV cccDNA, Empty, In vitro Experiment3, Fully digested |
| GSM7054628 |
MNase-seq, HBV cccDNA, Empty, In vitro Experiment3, Over digested |
| GSM7054629 |
MNase-seq, HBV cccDNA, undersaturated nucleosomes, In vitro Experiment3, Fully digested |
| GSM7054630 |
MNase-seq, HBV cccDNA, undersaturated nucleosomes, In vitro Experiment3, Over digested |
| GSM7054631 |
MNase-seq, HBV cccDNA, intermediate nucleosomes, In vitro Experiment3, Fully digested |
| GSM7054632 |
MNase-seq, HBV cccDNA, intermediate nucleosomes, In vitro Experiment3, Over digested |
| GSM7054633 |
MNase-seq, HBV cccDNA, saturated nucleosomes, In vitro Experiment3, Fully digested |
| GSM7054634 |
MNase-seq, HBV cccDNA, saturated nucleosomes, In vitro Experiment3, Over digested |
| GSM8335283 |
HepAD38, DMSO, H3k4me3, rep1 |
| GSM8335284 |
HepAD38, DMSO, H3k4me3, rep2 |
| GSM8335285 |
HepAD38, DMSO, Pol2, rep1 |
| GSM8335286 |
HepAD38, DMSO, Pol2, rep2 |
| GSM8335287 |
HepAD38, DMSO, Input, rep1 |
| GSM8335288 |
HepG2, cccDNA-transfected, DMSO, Input, rep1 |
| GSM8335289 |
HepG2, cccDNA-transfected, DMSO, H2A, rep1 |
| GSM8335290 |
HepG2, cccDNA-transfected, DMSO, H2A, rep2 |
| GSM8335291 |
HepG2, cccDNA-transfected, DMSO, H2B, rep1 |
| GSM8335292 |
HepG2, cccDNA-transfected, DMSO, H2B, rep2 |
| GSM8335293 |
HepG2, cccDNA-transfected, DMSO, H3, rep1 |
| GSM8335294 |
HepG2, cccDNA-transfected, DMSO, H3, rep2 |
| GSM8335295 |
HepG2, cccDNA-transfected, DMSO, H3K4me3, rep1 |
| GSM8335296 |
HepG2, cccDNA-transfected, DMSO, H3K4me3, rep2 |
| GSM8335297 |
HepG2, cccDNA-transfected, DMSO, Pol2, rep1 |
| GSM8335298 |
HepG2, cccDNA-transfected, DMSO, Pol2, rep2 |
| GSM8335299 |
HepG2, cccDNA-transfected, 500nM CBL137, Input, rep1 |
| GSM8335300 |
HepG2, cccDNA-transfected, 500nM CBL137, H2A, rep1 |
| GSM8335301 |
HepG2, cccDNA-transfected, 500nM CBL137, H2A, rep2 |
| GSM8335302 |
HepG2, cccDNA-transfected, 500nM CBL137, H2B, rep1 |
| GSM8335303 |
HepG2, cccDNA-transfected, 500nM CBL137, H2B, rep2 |
| GSM8335304 |
HepG2, cccDNA-transfected, 500nM CBL137, H3, rep1 |
| GSM8335305 |
HepG2, cccDNA-transfected, 500nM CBL137, H3, rep2 |
| GSM8335306 |
HepG2, cccDNA-transfected, 500nM CBL137, H3K4me3, rep1 |
| GSM8335307 |
HepG2, cccDNA-transfected, 500nM CBL137, H3K4me3, rep2 |
| GSM8335308 |
HepG2, cccDNA-transfected, 500nM CBL137, Pol2, rep1 |
| GSM8335309 |
HepG2, cccDNA-transfected, 500nM CBL137, Pol2, rep2 |
| GSM8335854 |
MNase-seq, HepG2.2.15 cells, 100U |
| GSM8335855 |
MNase-seq, HepG2.2.15 cells, 250U |
| GSM8335856 |
MNase-seq, HepAD38, DMSO, 125 U, rep 1 |
| GSM8335857 |
MNase-seq, HepAD38, DMSO, 125 U, rep 2 |
| GSM8335858 |
MNase-seq, HepAD38, DMSO, 125 U, rep 3 |
| GSM8335859 |
MNase-seq, HepAD38, DMSO, 1000 U, rep 1 |
| GSM8335860 |
MNase-seq, HepAD38, DMSO, 1000 U, rep 2 |
| GSM8335861 |
MNase-seq, HepAD38, DMSO, 1000 U, rep 3 |
| GSM8335862 |
MNase-seq, HepAD38, 500 nM CBL137, 125 U, rep 1 |
| GSM8335863 |
MNase-seq, HepAD38, 500 nM CBL137, 125 U, rep 2 |
| GSM8335864 |
MNase-seq, HepAD38, 500 nM CBL137, 125 U, rep 3 |
| GSM8335865 |
MNase-seq, HepAD38,500 nM CBL137 1000 U, rep 1 |
| GSM8335866 |
MNase-seq, HepAD38,500 nM CBL137 1000 U, rep 2 |
| GSM8335867 |
MNase-seq, HepAD38,500 nM CBL137 1000 U, rep 3 |
| GSM8335868 |
MNase-seq, HBV dslDNA assembled into chromatin using Nap1, 1-0X rep1 |
| GSM8335869 |
MNase-seq, HBV dslDNA assembled into chromatin using Nap1, 1-2X rep2 |
| GSM8335870 |
MNase-seq, HBV dslDNA assembled into chromatin using Nap1, 1-4X rep3 |
| GSM8335871 |
MNase-seq, HBV dslDNA assembled into chromatin using Nap1+ACF, 1-0X rep1 |
| GSM8335872 |
MNase-seq, HBV dslDNA assembled into chromatin using Nap1+ACF, 1-2X rep2 |
| GSM8335873 |
MNase-seq, HBV dslDNA assembled into chromatin using Nap1+ACF, 1-4X rep3 |
| GSM8335874 |
MNase-seq,HEK293T cells, mock transfection, t0, 0250U, 50C |
| GSM8335875 |
MNase-seq,HEK293T cells, mock transfection, t0, 0500U, 50C |
| GSM8335876 |
MNase-seq,HEK293T cells, mock transfection, t0, 1000U,50 C |
| GSM8335877 |
MNase-seq,HEK293T cells, mock transfection, t0, 2000U, 50C |
| GSM8335878 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t04, 0250U, 50C |
| GSM8335879 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t04, 0500U, 50C |
| GSM8335880 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t04, 1000U, 50C |
| GSM8335881 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t04, 2000U, 50C |
| GSM8335882 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t24, 0250U, 50C |
| GSM8335883 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t24, 0500U, 50C |
| GSM8335884 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t24, 1000U, 50C |
| GSM8335885 |
MNase-seq, HEK293T cells, HBV cccDNA transfection, t24, 2000U, 50C |
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| This SuperSeries is composed of the following SubSeries: |
| GSE225714 |
A nucleosome switch primes Hepatitis B Virus infection [RNA-Seq] |
| GSE225715 |
A nucleosome switch primes Hepatitis B Virus infection [Mnase-Seq] |
| GSE270130 |
A nucleosome switch primes Hepatitis B Virus infection [ChIP-Seq] |
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| Relations |
| BioProject |
PRJNA937206 |
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