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Series GSE2258 Query DataSets for GSE2258
Status Public on Apr 15, 2005
Title Allelic Imbalances in bladder tumors based on high-density SNP array
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Comparison between germline (blood) and microdissected bladder tumors to determine allelic imbalances. The GeneChip® Mapping 10K Early Access Array Affymetrix, Santa Clara, CA was used to determine the number of heterozygous SNPs in DNA from blood compared to the number of heterozygous SNPs in DNA from tumor in the same patient.
Keywords: repeat sample
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Submission date Feb 09, 2005
Last update date Mar 16, 2012
Contact name Karen Koed
Phone +45 8949 5194
Organization name Aarhus University Hospital, Skejby Sygehus
Department Dept. of Clinical Biochemistry
Lab Molecular Diagnostic Laboratory
Street address Brendstrupgaardsvej
City Aarhus N
ZIP/Postal code DK-8200
Country Denmark
Platforms (1)
GPL1855 Affymetrix GeneChip Mapping 10K Early Access Array
Samples (54)
GSM41412 112 blood
GSM41413 112-2 Ta bladder tumor
GSM41414 112-12 T1 badder tumor
BioProject PRJNA91365

Patient_summary_data header descriptions
Patient ID- visit number
Time between tumors (months)
Tumor Stage
Tumor Grade

Data table
Patient ID- visit number Time between tumors (months) Tumor Stage Tumor Grade
112-2 Ta Gr. III
112-12 47 T1 Gr. III
747-3 Ta Gr. II
747-5 7 T1 Gr. III
825-3 Ta Gr. III
825-5 6 T1 Gr. III
865-1 Ta Gr. II
865-2 5 T1 Gr. II
1058-3 Ta Gr. II
1058-10 29 T1 Gr. III
140-8 Ta Gr. III
140-12 18 Ta Gr. III
140-16 15 T1 Gr. III
154-5 Ta Gr. II
154-6 10 Ta Gr. II
154-10 31 T1 Gr. III
166-5 Ta Gr. II
166-9 25 Ta Gr. II
166-14 24 T1 Gr. III
941-4 Ta Gr. III

Total number of rows: 37

Table truncated, full table size <1 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided

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