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Series GSE225937 Query DataSets for GSE225937
Status Public on Nov 20, 2023
Title H3K27ac Hi-ChIP analysis in TAL1-FKBP12 Jurkat cells
Organism Homo sapiens
Experiment type Other
Genome binding/occupancy profiling by high throughput sequencing
Summary H3K27ac Hi-ChIP analysis was performed in TAL1-FKBP12 Jurkat cells to analyze active chromatin-chromatin interactions after DMSO or dTAG-13 treatment.
 
Overall design The cells were crosslinked with formaldehyde for 10 min. DNA was enriched by chromatin-immunoprecipitation (ChIP), tagmented with Tn5, subjected for library construction, and sequenced by the DNBseq platform. Hi-ChIP was performed using an antibody against H3K27ac (Abcam: ab4729).
 
Contributor(s) Ong JZ, Tan TK, Sanda T
Citation(s) 37855064
Submission date Feb 23, 2023
Last update date Nov 21, 2023
Contact name Tze King Tan
Organization name National University of Singapore
Department Cancer Science Institute
Lab Takaomi Sanda Lab
Street address 14 Medical Drive
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platforms (1)
GPL28038 DNBSEQ-G400 (Homo sapiens)
Samples (2)
GSM7060668 Jurkat_DMSO_H3K27ac_Hi-CHIP
GSM7060669 Jurkat_dTAG_H3K27ac_Hi-CHIP
This SubSeries is part of SuperSeries:
GSE225941 Regulatory mechanisms and context-dependent roles of TAL1 in TALL
Relations
BioProject PRJNA938077

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE225937_RAW.tar 8.9 Gb (http)(custom) TAR (of BED, BEDPE, TXT)
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Raw data are available in SRA
Processed data are available on Series record

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