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| Status |
Public on Mar 08, 2023 |
| Title |
Ribosome rescue factor PELOTA modulates translation start site choice and protein isoform levels of transcription factor C/EBPα |
| Organism |
Homo sapiens |
| Experiment type |
Other
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 01, 2023 |
| Last update date |
Mar 08, 2023 |
| Contact name |
Nicholas T Ingolia |
| E-mail(s) |
ingolia@berkeley.edu
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| Organization name |
University of California, Berkeley
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| Department |
Molecular and Cell Biology
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| Street address |
1 Barker Hall #3202
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| City |
Berkeley |
| ZIP/Postal code |
94709 |
| Country |
USA |
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| Platforms (2) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (40)
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| GSM7074827 |
K562 CEBPA reporter cell line, Gene Expression Sublibrary, Far Right bin |
| GSM7074828 |
K562 CEBPA reporter cell line, Gene Expression Sublibrary, Far Left bin |
| GSM7074829 |
K562 CEBPA reporter cell line, Gene Expression Sublibrary, Near Right bin |
| GSM7074830 |
K562 CEBPA reporter cell line, Gene Expression Sublibrary, Near Left bin |
| GSM7074831 |
K562 CEBPA reporter cell line, Kinases, Phosphatases, and Drug Targets Sublibrary, Far Right bin |
| GSM7074832 |
K562 CEBPA reporter cell line, Kinases, Phosphatases, and Drug Targets Sublibrary, Far Left bin |
| GSM7074833 |
K562 CEBPA reporter cell line, Kinases, Phosphatases, and Drug Targets Sublibrary, Near Right bin |
| GSM7074834 |
K562 CEBPA reporter cell line, Kinases, Phosphatases, and Drug Targets Sublibrary, Near Left bin |
| GSM7074835 |
K562 CEBPA reporter cell line, Cancer and Apoptosis Sublibrary, Far Right bin |
| GSM7074836 |
K562 CEBPA reporter cell line, Cancer and Apoptosis Sublibrary, Far Left bin |
| GSM7074837 |
K562 CEBPA reporter cell line, Cancer and Apoptosis Sublibrary, Near Right bin |
| GSM7074838 |
K562 CEBPA reporter cell line, Cancer and Apoptosis Sublibrary, Near Left bin |
| GSM7074839 |
K562 CEBPA reporter cell line, Stress and Proteostasis Sublibrary, Far Right bin |
| GSM7074840 |
K562 CEBPA reporter cell line, Stress and Proteostasis Sublibrary, Far Left bin |
| GSM7074841 |
K562 CEBPA reporter cell line, Stress and Proteostasis Sublibrary, Near Right bin |
| GSM7074842 |
K562 CEBPA reporter cell line, Stress and Proteostasis Sublibrary, Near Left bin |
| GSM7074843 |
K562 CEBPA reporter cell line, nontargeting sgRNA ribo RNAseI, biol rep 1 |
| GSM7074844 |
K562 CEBPA reporter cell line, nontargeting sgRNA ribo RNAseI, biol rep 2 |
| GSM7074845 |
K562 CEBPA reporter cell line, nontargeting sgRNA ribo RNAseI, biol rep 3 |
| GSM7074846 |
K562 CEBPA reporter cell line, PELO sgRNA ribo RNAseI, biol rep 1 |
| GSM7074847 |
K562 CEBPA reporter cell line, PELO sgRNA ribo RNAseI, biol rep 2 |
| GSM7074848 |
K562 CEBPA reporter cell line, PELO sgRNA ribo RNAseI, biol rep 3 |
| GSM7074849 |
K562 CEBPA reporter cell line, nontargeting sgRNA mRNA RNAseI, biol rep 1 |
| GSM7074850 |
K562 CEBPA reporter cell line, nontargeting sgRNA mRNA RNAseI, biol rep 2 |
| GSM7074851 |
K562 CEBPA reporter cell line, nontargeting sgRNA mRNA RNAseI, biol rep 3 |
| GSM7074852 |
K562 CEBPA reporter cell line, PELO sgRNA mRNA RNAseI, biol rep 1 |
| GSM7074853 |
K562 CEBPA reporter cell line, PELO sgRNA mRNA RNAseI, biol rep 2 |
| GSM7074854 |
K562 CEBPA reporter cell line, PELO sgRNA mRNA RNAseI, biol rep 3 |
| GSM7074855 |
K562 CEBPA reporter cell line, nontargeting sgRNA ribo PI, biol rep 1 |
| GSM7074856 |
K562 CEBPA reporter cell line, nontargeting sgRNA ribo PI, biol rep 2 |
| GSM7074857 |
K562 CEBPA reporter cell line, nontargeting sgRNA ribo PI, biol rep 3 |
| GSM7074858 |
K562 CEBPA reporter cell line, PELO sgRNA ribo PI, biol rep 1 |
| GSM7074859 |
K562 CEBPA reporter cell line, PELO sgRNA ribo PI, biol rep 2 |
| GSM7074860 |
K562 CEBPA reporter cell line, PELO sgRNA ribo PI, biol rep 3 |
| GSM7074861 |
K562 CEBPA reporter cell line, nontargeting sgRNA mRNA PI, biol rep 1 |
| GSM7074862 |
K562 CEBPA reporter cell line, nontargeting sgRNA mRNA PI, biol rep 2 |
| GSM7074863 |
K562 CEBPA reporter cell line, nontargeting sgRNA mRNA PI, biol rep 3 |
| GSM7074864 |
K562 CEBPA reporter cell line, PELO sgRNA mRNA PI, biol rep 1 |
| GSM7074865 |
K562 CEBPA reporter cell line, PELO sgRNA mRNA PI, biol rep 2 |
| GSM7074866 |
K562 CEBPA reporter cell line, PELO sgRNA mRNA PI, biol rep 3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE226435 |
Ribosome rescue factor PELOTA modulates translation start site choice and protein isoform levels of transcription factor C/EBPα [CRISPRi] |
| GSE226436 |
Ribosome rescue factor PELOTA modulates translation start site choice and protein isoform levels of transcription factor C/EBPα [riboprofiling] |
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| Relations |
| BioProject |
PRJNA940166 |
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