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Series GSE226811 Query DataSets for GSE226811
Status Public on Apr 24, 2023
Title Identification of bivalent genes in CD14+ Monocytes
Sample organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Third-party reanalysis
Summary Identification of bivalent genes, marked with both H3K4me3 and H3K27me3, in CD14+ Monocytes. Used previously published data sets for histone marks GSM1003536 and GSM1003564.
 
Overall design We used previously published ChIP-Seq data from ENCODE in CD14+ cells for histone markd H3K4me3 (GSM1003536) and H3K27me3 (GSM1003564) from the data series GSE29611 and called peaks with MACS2 with default parameters with the exception of H3K27me3 with the additional --broad parameter. Intersecting peaks were identified with the bedtools intersect tool. Processed data file generated for GSM1003536 and GSM1003564: CD14+_H3K27me3_H4k4me3_Intersection.bed.gz.
Web link https://pubmed.ncbi.nlm.nih.gov/37491334/
 
Contributor(s) Chu A, Fraineau S
Citation(s) 37491334
Submission date Mar 07, 2023
Last update date Jul 28, 2023
Contact name Sylvain Fraineau
Organization name Université de Rouen Normandie
Department UMR Inserm U1096
Street address 22 Gambetta Boulevard
City Rouen
ZIP/Postal code 76183
Country France
 
Relations
Reanalysis of GSM1003536
Reanalysis of GSM1003564

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE226811_CD14+_H3K27me3_H4k4me3_Intersection.bed.gz 80.8 Kb (ftp)(http) BED
GSE226811_data_processing_steps.txt.gz 383 b (ftp)(http) TXT
Processed data are available on Series record

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