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| Status |
Public on Mar 18, 2023 |
| Title |
NAT10 promotes the progression of clear cell renal cell carcinoma by regulating ac4C acetylation of NFE2L3 and activating AKT/GSK3β signaling pathway [ChIP-seq] |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
In order to determine how NAT10 regulates NFE2L3 to promote the progression of ccRCC, since NFE2L3 is a transcription factor, we performed CHP-seq detection for NFE2L3, as well as RNA-seq detection for 786-O cells with stable NFE2L3 knocking and control 786-O cells. The results of RNA-seq showed that 312 transcripts in the NFE2L3 knockdown group were down-regulated, and 3 114 transcripts in the previous ccRCC tissue were up-regulated. Moreover, after comprehensive analysis of ChIP-seq, there were 12 overlapping transcripts. Analysis of the expression levels of 12 transcripts in control cells and stable NFE2L3 knockout cells showed that the expression level of LASP1 was the highest in cells, so we hypothesized that NFE2L3 promoted the progression of ccRCC by affecting LASP1.
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| Overall design |
chip-seq was performed directly with 786-O cells
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| Contributor(s) |
Sun Z, Li W |
| Citation missing |
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| Submission date |
Mar 08, 2023 |
| Last update date |
Mar 18, 2023 |
| Contact name |
Zenghui Sun |
| E-mail(s) |
sunzh@mail.sdu.edu.cn
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| Phone |
15065654912
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| Organization name |
Shandong university
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| Street address |
44 Wenhua West Road, Lixia District
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| City |
Jinan |
| ZIP/Postal code |
250011 |
| Country |
China |
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| Platforms (1) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA942292 |
