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Status |
Public on Jun 08, 2023 |
Title |
ASH1L-MRG15 methyltransferase deposits H3K4me3 and FACT for damage verification in nucleotide excision repair |
Organism |
Homo sapiens |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
37393406 |
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Submission date |
Mar 09, 2023 |
Last update date |
Jul 03, 2023 |
Contact name |
Michelle Yancoskie |
Organization name |
Institute of Veterinary Pharmacology and Toxicology, University of Zurich
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Department |
Vetsuisse Faculty
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Lab |
Naegeli Lab
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Street address |
Winterthurerstr. 260
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City |
Zurich |
ZIP/Postal code |
8057 |
Country |
Switzerland |
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Platforms (1) |
GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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Samples (97)
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GSM6600679 |
H3K4me3 U2OS wildtype cells, no UV, biol rep1 |
GSM6600680 |
H3K4me3 U2OS wildtype cells, no UV, biol rep1, input |
GSM6600681 |
H3K4me3 U2OS wildtype cells, no UV, biol rep2 |
GSM6600682 |
H3K4me3 U2OS wildtype cells, no UV, biol rep2, input |
GSM6600683 |
H3K4me3 U2OS wildtype cells, no UV, biol rep3 |
GSM6600684 |
H3K4me3 U2OS wildtype cells, no UV, biol rep3, input |
GSM6600685 |
H3K4me3 U2OS wildtype cells, 1h post UV, biol rep1 |
GSM6600686 |
H3K4me3 U2OS wildtype cells, 1h post UV, biol rep1, input |
GSM6600687 |
H3K4me3 U2OS wildtype cells, 1h post UV, biol rep2 |
GSM6600688 |
H3K4me3 U2OS wildtype cells, 1h post UV, biol rep2, input |
GSM6600689 |
H3K4me3 U2OS wildtype cells, 1h post UV, biol rep3 |
GSM6600690 |
H3K4me3 U2OS wildtype cells, 1h post UV, biol rep3, input |
GSM6600691 |
H3K4me3 U2OS wildtype cells, 3h post UV, biol rep1 |
GSM6600692 |
H3K4me3 U2OS wildtype cells, 3h post UV, biol rep1, input |
GSM6600693 |
H3K4me3 U2OS wildtype cells, 3h post UV, biol rep2 |
GSM6600694 |
H3K4me3 U2OS wildtype cells, 3h post UV, biol rep2, input |
GSM6600695 |
H3K4me3 U2OS wildtype cells, 3h post UV, biol rep3 |
GSM6600696 |
H3K4me3 U2OS wildtype cells, 3h post UV, biol rep3, input |
GSM6600697 |
H3K4me3 U2OS ASH1L knockout cells, no UV, biol rep1 |
GSM6600698 |
H3K4me3 U2OS ASH1L knockout cells, no UV, biol rep1, input |
GSM6600699 |
H3K4me3 U2OS ASH1L knockout cells, no UV, biol rep2 |
GSM6600700 |
H3K4me3 U2OS ASH1L knockout cells, no UV, biol rep2, input |
GSM6600701 |
H3K4me3 U2OS ASH1L knockout cells, no UV, biol rep3 |
GSM6600702 |
H3K4me3 U2OS ASH1L knockout cells, no UV, biol rep3, input |
GSM6600703 |
H3K4me3 U2OS ASH1L knockout cells, 1h post UV, biol rep1 |
GSM6600704 |
H3K4me3 U2OS ASH1L knockout cells, 1h post UV, biol rep1, input |
GSM6600705 |
H3K4me3 U2OS ASH1L knockout cells, 1h post UV, biol rep2 |
GSM6600706 |
H3K4me3 U2OS ASH1L knockout cells, 1h post UV, biol rep2, input |
GSM6600707 |
H3K4me3 U2OS ASH1L knockout cells, 1h post UV, biol rep3 |
GSM6600708 |
H3K4me3 U2OS ASH1L knockout cells, 1h post UV, biol rep3, input |
GSM6600709 |
H3K4me3 U2OS ASH1L knockout cells, 3h post UV, biol rep1 |
GSM6600710 |
H3K4me3 U2OS ASH1L knockout cells, 3h post UV, biol rep1, input |
GSM6600711 |
H3K4me3 U2OS ASH1L knockout cells, 3h post UV, biol rep2 |
GSM6600712 |
H3K4me3 U2OS ASH1L knockout cells, 3h post UV, biol rep2, input |
GSM6600713 |
H3K4me3 U2OS ASH1L knockout cells, 3h post UV, biol rep3 |
GSM6600714 |
H3K4me3 U2OS ASH1L knockout cells, 3h post UV, biol rep3, input |
GSM6600715 |
XPC U2OS wildtype cells, no UV, biol rep1 |
GSM6600716 |
XPC U2OS wildtype cells, no UV, biol rep2 |
GSM6600717 |
XPC U2OS wildtype cells, no UV, biol rep3 |
GSM6600718 |
XPC U2OS wildtype cells, no UV, biol rep4 |
GSM6600719 |
XPC U2OS ASH1L knockout cells, no UV, biol rep1 |
GSM6600720 |
XPC U2OS ASH1L knockout cells, no UV, biol rep2 |
GSM6600721 |
XPC U2OS ASH1L knockout cells, no UV, biol rep3 |
GSM6600722 |
XPC U2OS XPC knockout cells, no UV, biol rep1 |
GSM6600723 |
XPC U2OS XPC knockout cells, no UV, biol rep2 |
GSM6600724 |
XPC U2OS wildtype cells, 1h post UV, biol rep1 |
GSM6600725 |
XPC U2OS wildtype cells, 1h post UV, biol rep2 |
GSM6600726 |
XPC U2OS wildtype cells, 1h post UV, biol rep3 |
GSM6600727 |
XPC U2OS ASH1L knockout cells, 1h post UV, biol rep1 |
GSM6600728 |
XPC U2OS ASH1L knockout cells, 1h post UV, biol rep2 |
GSM6600729 |
XPC U2OS ASH1L knockout cells, 1h post UV, biol rep3 |
GSM6600730 |
XPC U2OS XPC knockout cells, 1h post UV, biol rep1 |
GSM6600731 |
XPC U2OS XPC knockout cells, 1h post UV, biol rep2 |
GSM6600732 |
XPC U2OS wildtype cells, 3h post UV, biol rep1 |
GSM6600733 |
XPC U2OS wildtype cells, 3h post UV, biol rep2 |
GSM6600734 |
XPC U2OS wildtype cells, 3h post UV, biol rep3 |
GSM6600735 |
XPC U2OS ASH1L knockout cells, 3h post UV, biol rep1 |
GSM6600736 |
XPC U2OS ASH1L knockout cells, 3h post UV, biol rep2 |
GSM6600737 |
XPC U2OS ASH1L knockout cells, 3h post UV, biol rep3 |
GSM6600738 |
XPC U2OS XPC knockout cells, 3h post UV, biol rep1 |
GSM6600739 |
XPC U2OS XPC knockout cells, 3h post UV, biol rep2 |
GSM7089925 |
U2OS wildtype cells, no UV, biol rep1 |
GSM7089926 |
U2OS wildtype cells, no UV, biol rep2 |
GSM7089927 |
U2OS wildtype cells, 3h post UV, biol rep1 |
GSM7089928 |
U2OS wildtype cells, 3h post UV, biol rep2 |
GSM7089929 |
U2OS ASH1L knockout cells, no UV, biol rep1 |
GSM7089930 |
U2OS ASH1L knockout, no UV, biol rep2 |
GSM7089931 |
U2OS ASH1L knockout, 3h post UV, biol rep1 |
GSM7089932 |
U2OS ASH1L knockout, 3h post UV, biol rep2 |
GSM7089933 |
U2OS wildtype cells, no UV, biol rep1 [single] |
GSM7089934 |
U2OS wildtype cells, no UV, biol rep1 [paired-end] |
GSM7089935 |
U2OS wildtype cells, no UV, biol rep1, input [single] |
GSM7089936 |
U2OS wildtype cells, no UV, biol rep1, input [paired-end] |
GSM7089937 |
U2OS wildtype cells, no UV, biol rep2 [single] |
GSM7089938 |
U2OS wildtype cells, no UV, biol rep2 [paired-end] |
GSM7089939 |
U2OS wildtype cells, no UV, biol rep2, input [single] |
GSM7089940 |
U2OS wildtype cells, no UV, biol rep2, input [paired-end] |
GSM7089941 |
U2OS wildtype cells, 3h post UV, biol rep1 [single] |
GSM7089942 |
U2OS wildtype cells, 3h post UV, biol rep1 [paired-end] |
GSM7089943 |
U2OS wildtype cells, 3h post UV, biol rep1, input [single] |
GSM7089944 |
U2OS wildtype cells, 3h post UV, biol rep1, input [paired-end] |
GSM7089945 |
U2OS wildtype cells, 3h post UV, biol rep2 [single] |
GSM7089946 |
U2OS wildtype cells, 3h post UV, biol rep2 [paired-end] |
GSM7089947 |
U2OS wildtype cells, 3h post UV, biol rep2, input [single] |
GSM7089948 |
U2OS wildtype cells, 3h post UV, biol rep2, input [paired-end] |
GSM7089949 |
U2OS ASH1L knockout cells transfected with ASH1L-CTD, no UV, biol rep1 |
GSM7089950 |
U2OS ASH1L knockout cells transfected with ASH1L-CTD, no UV, biol rep2 |
GSM7089951 |
U2OS ASH1L knockout cells transfected with ASH1L-CTD, no UV, biol rep3 |
GSM7089952 |
U2OS ASH1L knockout cells transfected with empty vector, no UV, biol rep1 |
GSM7089953 |
U2OS ASH1L knockout cells transfected with empty vector, no UV, biol rep2 |
GSM7089954 |
U2OS ASH1L knockout cells transfected with empty vector, no UV, biol rep3 |
GSM7089955 |
U2OS ASH1L knockout cells transfected with ASH1L-CTD, 3H, biol rep1 |
GSM7089956 |
U2OS ASH1L knockout cells transfected with ASH1L-CTD, 3H, biol rep2 |
GSM7089957 |
U2OS ASH1L knockout cells transfected with ASH1L-CTD, 3H, biol rep3 |
GSM7089958 |
U2OS ASH1L knockout cells transfected with empty vector, 3H, biol rep1 |
GSM7089959 |
U2OS ASH1L knockout cells transfected with empty vector, 3H, biol rep2 |
GSM7089960 |
U2OS ASH1L knockout cells transfected with empty vector, 3H, biol rep3 |
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This SuperSeries is composed of the following SubSeries: |
GSE214182 |
ASH1L methyltransferase deposits H3K4me3 and FACT for damage verification in nucleotide excision repair [ChIP-Seq] |
GSE227007 |
ASH1L methyltransferase deposits H3K4me3 and FACT for damage verification in nucleotide excision repair [ATAC-Seq] |
GSE227008 |
ASH1L methyltransferase deposits H3K4me3 and FACT for damage verification in nucleotide excision repair [ChIP-Seq ASH1L-CTD] |
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Relations |
BioProject |
PRJNA942778 |
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