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Series GSE227383 Query DataSets for GSE227383
Status Public on Mar 16, 2023
Title The inability to disassemble Rad51 nucleoprotein filaments leads to aberrant mitosis and cell death
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The proper maintenance of genetic material is essential for the survival of living organisms. One of the main safeguards of genome stability is homologous recombination involved in the faithful repair of DNA double-strand breaks, the restoration of collapsed replication forks, and the bypass of replication barriers. Homologous recombination relies on the formation of Rad51 nucleofilaments which are responsible for the homology-based interactions between DNA strands. Here we demonstrate that without the regulation of these filaments by Srs2 and Rad54, which are known to remove Rad51 from single-stranded and double-stranded DNA respectively, the filaments strongly inhibit damage-associated DNA synthesis during DNA repair. Furthermore, this regulation is essential for cell survival under normal growth conditions as in the srs2Δ rad54Δ mutants unregulated Rad51 nucleofilaments cause activation of the DNA damage checkpoint, formation of mitotic bridges and loss of genetic material. These genome instability features may stem from the problems at stalled replication forks as the lack of Srs2 and Rad54 in the presence of Rad51 nucleofilaments impedes cell recovery from replication stress. This study demonstrates that the timely and efficient disassembly of recombination machinery is essential for genome maintenance and cell survival.
 
Overall design Rad51-specific ChIP-seq. The locus specific accumulation of Rad51 in induced PGAL1-RAD55 srs2Δ rad54Δ cells was tested (two biological repeats). PGAL1-RAD55 strains were used as controls (two biological repeats). A strain with an HO-inducible unrepairable double-strand break was also included as a control for the ChIP-seq protocol.
Web link https://www.mdpi.com/2227-9059/11/5/1450
 
Contributor(s) Andriuskevicius T, Dubenko A, Makovets S
Citation(s) 37239121
Submission date Mar 15, 2023
Last update date Jun 15, 2023
Contact name Tadas Andriuskevicius
Organization name The University of Edinburgh
Department Institute of Cell Biology, School of Biological Sciences
Street address Alexander Crum Brown Road
City Edinburgh
ZIP/Postal code EH9 3FF
Country United Kingdom
 
Platforms (1)
GPL22715 Illumina MiniSeq (Saccharomyces cerevisiae)
Samples (12)
GSM7099694 1325_RAF_input
GSM7099695 1325_RAF_IP
GSM7099696 1325_GAL_input
Relations
BioProject PRJNA944939

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Supplementary file Size Download File type/resource
GSE227383_1325_induced_uninduced_ratio.bigwig 1.8 Mb (ftp)(http) BIGWIG
GSE227383_mutant_7208_7208_control_6933_6934_ratio_mean.bigwig 1.8 Mb (ftp)(http) BIGWIG
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Processed data are available on Series record

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