NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE227399 Query DataSets for GSE227399
Status Public on Mar 18, 2023
Title Defining CD8+ T cells that provide the proliferative burst after PD-1 therapy
Organism Mus musculus
Experiment type Expression profiling by array
Summary Chronic viral infections are characterized by a state of CD8 T cell dysfunction termed exhaustion. A better understanding of the mechanisms that regulate CD8 T cell responses during chronic infection is required to improve immunotherapies that restore function in exhausted CD8 T cells. Here we identify a novel population of virus-specific CD8 T cells with a T follicular helper (Tfh)-like signature in mice chronically infected with lymphocytic choriomeningitis virus (LCMV). These Tfh-like CD8 T cells expressed the programmed cell death-1 (PD-1) inhibitory receptor but at the same time also expressed co-stimulatory molecules and had a gene signature that was related to CD8 T cell memory precursor cells and hematopoietic stem cells (HSC). These Tfh-like CD8 T cells acted as stem cells during chronic infection undergoing self-renewal and also differentiating into the terminally exhausted CD8 T cells that were present in both lymphoid and non-lymphoid tissues. The Tfh-like CD8 T cells were found only in lymphoid tissues and resided predominantly in the T cell zones along with naïve CD8 T cells. Interestingly, the proliferative burst after PD-1 blockade came almost exclusively from this Tfh-like CD8 T cell subset. Importantly, the transcription factor TCF1 played a cell intrinsic and essential role in the generation of Tfh-like CD8 T cells. Taken together, our study identifies Tfh-like CD8 T cells as the critical subset for maintaining the pool of virus-specific CD8 T cells during chronic infection and as the cells that proliferate after PD-1 blockade. These findings provide a better understanding of T cell exhaustion and have implications towards optimizing PD-1 directed immunotherapy.
 
Overall design 12 samples isolated from CD8 T-cells in naïve mice (5 naive) and B16F10-GP bearing mice (3 PD-1+ Tim-3-, 4 PD-1+ Tim-3+) cells were analyzed
 
Contributor(s) Im S, Ahmed R
Citation(s) 37782797
Submission date Mar 15, 2023
Last update date Feb 07, 2024
Contact name Se Jin Im
E-mail(s) sejinim@skku.edu
Organization name Sungkyunkwan University School of Medicine
Department Department of Immunology
Lab Infection and Tumor Immunology
Street address 2066, Seobu-ro, Jangan-gu
City Suwon-si
State/province Gyeonggi-do
ZIP/Postal code 16419
Country South Korea
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (12)
GSM7099986 Splenocytes_naïve_rep1
GSM7099987 Splenocytes_naïve_rep2
GSM7099988 TILs_Tm PD-1+ Tim-3+_rep1
Relations
BioProject PRJNA944969

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE227399_RAW.tar 42.5 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap