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Status |
Public on Mar 27, 2023 |
Title |
Treatment of 1,25(OH)2D3 or Antagonist in HCT116 WT and VDRKO cell lines |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Purpose: The goals of this study are to compare gene expression between Wild Type and VDR KO in HCT116 cell lines.
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Overall design |
Examination of triplicate, 2 different treatment in 2 cell types.
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Contributor(s) |
Kanemoto Y, Iwaki M, Sawada T, Nagasawa K, Kato S |
Citation missing |
Has this study been published? Please login to update or notify GEO. |
Submission date |
Mar 22, 2023 |
Last update date |
Mar 30, 2023 |
Contact name |
Yoshiaki Kanemoto |
E-mail(s) |
ykanemo164@gmail.com
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Phone |
0246815522
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Organization name |
Jyoban Hospital
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Street address |
kaminodai 57, jyobankamiyunagaya-town
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City |
Iwaki |
State/province |
Fukushima |
ZIP/Postal code |
972-8322 |
Country |
Japan |
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Platforms (1) |
GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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Samples (30)
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GSM7110635 |
parent, 1,25(OH)2D3+antagonist,1 |
GSM7110636 |
VDRKO, Vehicle,1 |
GSM7110637 |
VDRKO, 1,25(OH)2D3,1 |
GSM7110638 |
VDRKO, antagonist,1 |
GSM7110639 |
VDRKO, 1,25(OH)2D3+antagonist,1 |
GSM7110640 |
parent, Vehicle,2 |
GSM7110641 |
parent, 1,25(OH)2D3,2 |
GSM7110642 |
parent, antagonist,2 |
GSM7110643 |
parent, 1,25(OH)2D3+antagonist,2 |
GSM7110644 |
VDRKO, Vehicle,2 |
GSM7110645 |
VDRKO, 1,25(OH)2D3,2 |
GSM7110646 |
VDRKO, antagonist,2 |
GSM7110647 |
VDRKO, 1,25(OH)2D3+antagonist,2 |
GSM7110648 |
parent, Vehicle,3 |
GSM7110649 |
parent, 1,25(OH)2D3,3 |
GSM7110650 |
parent, antagonist,3 |
GSM7110651 |
parent, 1,25(OH)2D3+antagonist,3 |
GSM7110652 |
VDRKO, Vehicle,3 |
GSM7110653 |
VDRKO, 1,25(OH)2D3,3 |
GSM7110654 |
VDRKO, antagonist,3 |
GSM7110655 |
VDRKO, 1,25(OH)2D3+antagonist,3 |
GSM7110656 |
Vehicle,1 |
GSM7110657 |
Vehicle,2 |
GSM7110658 |
Vehicle,3 |
GSM7110659 |
1,25(OH)2D3,1 |
GSM7110660 |
1,25(OH)2D3,2 |
GSM7110661 |
1,25(OH)2D3,3 |
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Relations |
BioProject |
PRJNA947489 |
Supplementary file |
Size |
Download |
File type/resource |
GSE227910_RAW.tar |
4.6 Gb |
(http)(custom) |
TAR (of BW) |
GSE227910_gene-FPKM_name.txt.gz |
14.1 Mb |
(ftp)(http) |
TXT |
GSE227910_gene-featureCount-else-int_name.txt.gz |
7.6 Mb |
(ftp)(http) |
TXT |
GSE227910_transcript-FPKM_name.txt.gz |
46.9 Mb |
(ftp)(http) |
TXT |
GSE227910_transcript-featureCount-else-int_name.txt.gz |
13.1 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
Processed data are available on Series record |
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