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| Status |
Public on Jun 09, 2023 |
| Title |
KDM6A Epigenetically Regulates Subtype Plasticity in Small Cell Lung Cancer |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
37591951 |
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| Submission date |
Mar 28, 2023 |
| Last update date |
Sep 09, 2023 |
| Contact name |
Leslie Duplaquet |
| E-mail(s) |
leslie_duplaquet@dfci.harvard.edu
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| Organization name |
DFCI
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| Department |
Medical Oncology
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| Lab |
Oser Lab
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| Street address |
360 Longwood Ave
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| City |
Boston |
| State/province |
Massachusetts |
| ZIP/Postal code |
02215 |
| Country |
USA |
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| Platforms (2) |
| GPL21626 |
NextSeq 550 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (45)
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| GSM6454612 |
t535_sgControl RPP |
| GSM6454613 |
t542_sgControl RPP |
| GSM6454614 |
t645_sgControl RPP |
| GSM6454615 |
t236L_sgKdm6a RPP |
| GSM6454616 |
t236R_sgKdm6a RPP |
| GSM6454617 |
t656_sgKdm6a RPP |
| GSM6454618 |
t651L_sgKdm6a RPP |
| GSM6454619 |
t651R_sgKdm6a RPP |
| GSM6454620 |
t672_1_sgKdm6a RPP |
| GSM6454621 |
t672_2_sgKdm6a RPP |
| GSM6454703 |
H3K27me3_sgCTRL_159-1 |
| GSM6454704 |
H3K27me3_sgCTRL_1014 |
| GSM6454705 |
H3K27me3_sgKDM6A_236L |
| GSM6454706 |
H3K27me3_sgKDM6A_236R |
| GSM6454707 |
H3K4me2_sgCTRL_159-1 |
| GSM6454708 |
H3K4me2_sgCTRL_1014 |
| GSM6454709 |
H3K4me2_sgKDM6A_236L |
| GSM6454710 |
H3K4me2_sgKDM6A_236R |
| GSM6454711 |
InputH3K4me2_H3K27me3_sgCTRL_159-1 |
| GSM6454712 |
InputH3K4me2_H3K27me3_sgCTRL_1014 |
| GSM6454713 |
InputH3K4me2_H3K27me3_sgCTRL_236L |
| GSM6454714 |
InputH3K4me2_H3K27me3_sgCTRL_236R |
| GSM6454715 |
KDM6A_sgCTRL_159-1 |
| GSM6454716 |
KDM6A_sgCTRL_1014 |
| GSM6454717 |
Input_KDM6A_sgCTRL_159-1 |
| GSM6454718 |
Input_KDM6A_sgCTRL_1014 |
| GSM7119223 |
INPUT, 1014 sgKdm6a, DMSO, rep1 |
| GSM7119224 |
INPUT, 1014 sgKdm6a, DMSO, rep2 |
| GSM7119225 |
INPUT, 1014 sgKdm6a, VTP, rep1 |
| GSM7119226 |
INPUT, 1014 sgKdm6a, VTP, rep2 |
| GSM7119227 |
Menin-ChIP, 1014 sgKdm6a, DMSO, rep1 |
| GSM7119228 |
Menin-ChIP, 1014 sgKdm6a, DMSO, rep2 |
| GSM7119229 |
Menin-ChIP, 1014 sgKdm6a, VTP, rep1 |
| GSM7119230 |
Menin-ChIP, 1014 sgKdm6a, VTP, rep2 |
| GSM7141036 |
H3K4me1_sgCTRL_159_1 |
| GSM7141037 |
H3K4me1_sgCTRL_1014_1 |
| GSM7141038 |
H3K4me1_sgKDM6A_236L_1 |
| GSM7141039 |
H3K4me1_sgKDM6A_236R_1 |
| GSM7141040 |
InputB_sgCTRL_159_1 |
| GSM7141041 |
InputB_sgCTRL_1014_1 |
| GSM7141042 |
InputB_sgKDM6A_236L_1 |
| GSM7141043 |
InputB_sgKDM6A_236R_1 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE211160 |
Small Cell Lung Cancer Subtype Plasticity is Regulated by KDM6A/UTX [RNA-Seq] |
| GSE211165 |
KDM6A Epigenetically Regulates Subtype Plasticity in Small Cell Lung Cancer |
| GSE228345 |
Small Cell Lung Cancer Subtype Plasticity is Regulated by KDM6A/UTX [ChIP-Seq] |
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| Relations |
| BioProject |
PRJNA949514 |
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