 |
 |
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Nov 08, 2023 |
Title |
RNA-Seq study of small follicles and large follicles in Indian Ghoongroo pigs |
Organism |
Sus scrofa |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
To gain insight into the differentially expressed genes (DEGs) and signalling pathways regulating development of small follicles (SF diameter ≥3 mm to <6 mm) into large follicles (LF diameter ≥6 mm) in Ghoongroo pigs, a comprehensive transcriptome profiling of porcine follicles was conducted using NovaSeq600 sequencing platform. The DEGs were identified using DESeq2 with threshold of padj <0.05 and log2 Fold Change cut off 0.58. Functional annotations and bioinformatics analysis of the DEGs were performed to find out biological functions, signalling pathways and hub genes regulating follicular development and function.
|
|
|
Overall design |
Differential gene expression profiling analysis of RNA-seq data for Large follicle (3) and Small follicle (2)
|
Web link |
https://doi.org/10.1016/j.jri.2023.104164
|
|
|
Contributor(s) |
Bharati J, Kumar S, Mohan NH, Das BC, Gupta VK |
Citation(s) |
37924675 |
|
Submission date |
Apr 03, 2023 |
Last update date |
Nov 09, 2023 |
Contact name |
Jaya Bharati |
E-mail(s) |
jaya@icar.gov.in
|
Phone |
08307719182
|
Organization name |
ICAR-National Research Centre on Pig, Guwahati, Assam
|
Department |
Animal Physiology
|
Lab |
Physiology Lab
|
Street address |
ICAR-NRC on Pig, Rani
|
City |
Guwahati |
State/province |
ASSAM |
ZIP/Postal code |
781131 |
Country |
India |
|
|
Platforms (1) |
GPL26351 |
Illumina NovaSeq 6000 (Sus scrofa) |
|
Samples (5)
|
|
Relations |
BioProject |
PRJNA951634 |
Supplementary file |
Size |
Download |
File type/resource |
GSE228787_RAW.tar |
5.8 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
|
|
|
|
 |