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Series GSE228787 Query DataSets for GSE228787
Status Public on Nov 08, 2023
Title RNA-Seq study of small follicles and large follicles in Indian Ghoongroo pigs
Organism Sus scrofa
Experiment type Expression profiling by high throughput sequencing
Summary To gain insight into the differentially expressed genes (DEGs) and signalling pathways regulating development of small follicles (SF diameter ≥3 mm to <6 mm) into large follicles (LF diameter ≥6 mm) in Ghoongroo pigs, a comprehensive transcriptome profiling of porcine follicles was conducted using NovaSeq600 sequencing platform. The DEGs were identified using DESeq2 with threshold of padj <0.05 and log2 Fold Change cut off 0.58. Functional annotations and bioinformatics analysis of the DEGs were performed to find out biological functions, signalling pathways and hub genes regulating follicular development and function.
 
Overall design Differential gene expression profiling analysis of RNA-seq data for Large follicle (3) and Small follicle (2)
Web link https://doi.org/10.1016/j.jri.2023.104164
 
Contributor(s) Bharati J, Kumar S, Mohan NH, Das BC, Gupta VK
Citation(s) 37924675
Submission date Apr 03, 2023
Last update date Nov 09, 2023
Contact name Jaya Bharati
E-mail(s) jaya@icar.gov.in
Phone 08307719182
Organization name ICAR-National Research Centre on Pig, Guwahati, Assam
Department Animal Physiology
Lab Physiology Lab
Street address ICAR-NRC on Pig, Rani
City Guwahati
State/province ASSAM
ZIP/Postal code 781131
Country India
 
Platforms (1)
GPL26351 Illumina NovaSeq 6000 (Sus scrofa)
Samples (5)
GSM7136569 Ovarian Follicle, Large, Biol Rep1
GSM7136570 Ovarian Follicle, Large, Biol Rep2
GSM7136571 Ovarian Follicle, Large, Biol Rep3
Relations
BioProject PRJNA951634

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE228787_RAW.tar 5.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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