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Series GSE229638 Query DataSets for GSE229638
Status Public on Apr 30, 2023
Title Gene expression profile at single cell level of cells from the murine small intestine (SI) lacking functional Apc.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We used single cell RNA sequencing (scRNA-seq) to analyze the diversity of cells within the murine small intestine in the absence of functional Apc.
Overall design Cells from a 5-15cm portion of small intestine were isolated from mice with short term Apc inactivation, before analysis with scRNAseq
Contributor(s) Vande Voorde J, Raven A, Mills M, Gilroy K, Sansom O
Citation(s) 37580540
Submission date Apr 13, 2023
Last update date Sep 14, 2023
Contact name Kathryn Gilroy
Organization name Beatson Institute for Cancer Research
Street address Garscube
City Glasgow
ZIP/Postal code G611BD
Country United Kingdom
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (2)
GSM7169637 Apc SI, replicate 1, scRNAseq
GSM7169638 Apc SI, replicate 2, scRNAseq
This SubSeries is part of SuperSeries:
GSE229648 Metabolic profiling stratifies colorectal cancer and reveals adenosylhomocysteinase as a therapeutic target
BioProject PRJNA955216

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE229638_RAW.tar 99.0 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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