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Series GSE230218 Query DataSets for GSE230218
Status Public on Apr 19, 2024
Title 35S:NTL-SRDX pnet2_ab mutants
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: To understand the molecular mechanism between PNET2 and NTLs, we generated 35S:NTL-SRDX in pnet2_ab mutants to suppress NTL gene expression and performed the whole genome transcriptome analysis on 4-week-old plants of WT, pnet2_ab, 35S:NTL6-SRDX pnet2_ab, 35S:NTL9-SRDX pnet2_ab, and 35S:NTL12-SRDX pnet2_ab.
Conclusions: PNET2 regulates diverse responses by associating with a family of membrane-bound transcriptional factors.
 
Overall design mRNA profiles of 4-week-old plants of wild type (Col-0), pnet2_ab, 35S:NTL6-SRDX pnet2_ab, 35S:NTL9-SRDX pnet2_ab, and 35S:NTL12-SRDX pnet2_ab mutants were generated by deep sequencing, in triplicate, using Illumina HiSeq 2000.
 
Contributor(s) Gu Y, Tang Y
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Submission date Apr 20, 2023
Last update date Apr 19, 2024
Contact name Yangnan Gu
E-mail(s) yutang@berkeley.edu
Phone 5107786218
Organization name UC Berkeley
Street address 371 Koshland Hall, Berkeley, CA 94720, Department of Plant & Microbial Biology
City Berkeley
State/province California
ZIP/Postal code 94720
Country USA
 
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (10)
GSM7196592 WT_1
GSM7196593 WT_2
GSM7196594 pnet2_1
Relations
BioProject PRJNA957900

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE230218_gene_count.txt.gz 2.1 Mb (ftp)(http) TXT
GSE230218_gene_fpkm.txt.gz 3.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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