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Series GSE230218 Query DataSets for GSE230218
Status Public on Apr 19, 2024
Title 35S:NTL-SRDX pnet2_ab mutants
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: To understand the molecular mechanism between PNET2 and NTLs, we generated 35S:NTL-SRDX in pnet2_ab mutants to suppress NTL gene expression and performed the whole genome transcriptome analysis on 4-week-old plants of WT, pnet2_ab, 35S:NTL6-SRDX pnet2_ab, 35S:NTL9-SRDX pnet2_ab, and 35S:NTL12-SRDX pnet2_ab.
Conclusions: PNET2 regulates diverse responses by associating with a family of membrane-bound transcriptional factors.
Overall design mRNA profiles of 4-week-old plants of wild type (Col-0), pnet2_ab, 35S:NTL6-SRDX pnet2_ab, 35S:NTL9-SRDX pnet2_ab, and 35S:NTL12-SRDX pnet2_ab mutants were generated by deep sequencing, in triplicate, using Illumina HiSeq 2000.
Contributor(s) Gu Y, Tang Y
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Submission date Apr 20, 2023
Last update date Apr 19, 2024
Contact name Yangnan Gu
Phone 5107786218
Organization name UC Berkeley
Street address 371 Koshland Hall, Berkeley, CA 94720, Department of Plant & Microbial Biology
City Berkeley
State/province California
ZIP/Postal code 94720
Country USA
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (10)
GSM7196592 WT_1
GSM7196593 WT_2
GSM7196594 pnet2_1
BioProject PRJNA957900

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE230218_gene_count.txt.gz 2.1 Mb (ftp)(http) TXT
GSE230218_gene_fpkm.txt.gz 3.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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