NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE230356 Query DataSets for GSE230356
Status Public on Jun 07, 2023
Title Prenatal exposure to benzo[a]pyrene depletes ovarian reserve and masculinizes embryonic ovarian germ cell transcriptome transgenerationally [Bisulfite-Seq]
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary People are exposed to polycyclic aromatic hydrocarbons, like benzo[a]pyrene (BaP), via inhalation of particulate matter air pollution and ingestion of grilled and smoked foods. Prenatal exposure to BaP destroys germ cells in ovaries, causing earlier onset of ovarian senescence post-natally. Developing testes are affected at higher doses than ovaries. However, it is not known if adverse effects are transmitted to subsequent generations. We orally dosed pregnant female mice (F0) with 0.033, 0.2, or 2 mg/kg-day BaP or vehicle from embryonic day (E) 6.5-11.5 (F1 offspring) or E6.5-15.5 (F2 and F3). Ovarian germ cell and follicle numbers were significantly decreased in F3 females at all doses of BaP; testicular germ cells were not affected. E13.5 germ cell RNA-sequencing revealed significantly increased expression of male-specific genes in female germ cells across generations and BaP doses. Our study demonstrated that F0 BaP exposure partially disrupted sexual identity of female germ cells transgenerationally.
 
Overall design Whole genome bisulfite sequencing of FACS-enriched mouse primordial germ cells with or without gestational exposure to banzo[a]pyrene: Repeated Experiment (F3 primordial germ cells)
 
Contributor(s) Shioda T, Lim J, Luderer U
Citation(s) 37248279
Submission date Apr 22, 2023
Last update date Jun 08, 2023
Contact name Toshi Shioda
E-mail(s) tshioda@partners.org
Phone (617) 726-3425
Organization name MGH Cancer Center
Department Center for Cancer Research
Lab Molecular Profiling Lab
Street address Building 149 - 7th Floor, 13th Street
City Charlestown
State/province MA
ZIP/Postal code 02129
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM7220314 Female_high
GSM7220315 Female_low
GSM7220316 Female_oil
Relations
BioProject PRJNA960654

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE230356_RAW.tar 921.8 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap