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Series GSE230496 Query DataSets for GSE230496
Status Public on Apr 17, 2024
Title Epigenomic profiling by ATAC-seq and ChIL-seq in B cells and plasma cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed ATAC-seq and H3.3 ChIL-seq to underdatand dynamic change of chromatin accessibility and H3.3 deposition into genome during B cell differentiation.
Overall design ChIL-seq for H3.3 on naive B cells, activated B cells and PCs after LPS stimulation was conducted. ATAC-seq was perfomed in naïve B cells and LPS-induced plamsa cells. We also used B cells expressing GFP-H3.3 or control vector for ATAC-seq and ChiL-seq for anti-H3.3 or GFP antibodies.
Contributor(s) Saito Y, Harada A, Ohkawa Y, Baba Y
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Submission date Apr 24, 2023
Last update date Apr 18, 2024
Contact name Yasuyuki Ohkawa
Organization name Medical Institute of Bioregulation
Lab Division of Transcriptomics
Street address 3-1-1 Maidashi
City Fukuoka
ZIP/Postal code 8128582
Country Japan
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (32)
GSM7225369 Naive, rep1
GSM7225370 Naive, rep2
GSM7225371 Naive, rep3
BioProject PRJNA961227

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Supplementary file Size Download File type/resource
GSE230496_ATAC_PC_merged.q0.01_summits.bed.gz 770.5 Kb (ftp)(http) BED
GSE230496_ATAC_naive_merged.q0.01_summits.bed.gz 782.4 Kb (ftp)(http) BED
GSE230496_Naive_H3p3_repMerged.q0.01_noMnoL_summits.bed.gz 625.4 Kb (ftp)(http) BED
GSE230496_PC_H3p3_repMerged.q0.01_noMnoL_summits.bed.gz 105.5 Kb (ftp)(http) BED
GSE230496_RAW.tar 1.0 Gb (http)(custom) TAR (of BW)
GSE230496_nonPC_H3p3_repMerged.q0.01_noMnoL_summits.bed.gz 121.0 Kb (ftp)(http) BED
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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