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Series GSE230694 Query DataSets for GSE230694
Status Public on Aug 08, 2023
Title METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Other
Summary Newly growing evidence highlights the essential role that epitranscriptomic marks play in the development of cancer; however, little is known about the role and implications of altered epitranscriptome deposition in prostate cancer. Here, we show that the transfer RNA N7-methylguanosine (m7G) transferase METTL1 is highly expressed in primary and advanced prostate tumours. Mechanistically, we find that METTL1 depletion causes the loss of m7G tRNA methylation and promotes the biogenesis of a novel class of small non-coding RNAs derived from 5’tRNA fragments. 5′ tRNA-derived small RNAs steer translation control to favour the synthesis of key regulators of tumour growth suppression, interferon pathway, and immune effectors. Knockdown of Mettl1 in prostate cancer preclinical models increases intratumoural infiltration of pro-inflammatory immune cells and enhances responses to immunotherapy, leading to decreased tumour progression. Collectively, our findings reveal a therapeutically actionable role of METTL1-directed m7G tRNA methylation in cancer cell translational control and tumour biology.
 
Overall design Sequences of RNAs bound to METTL1 in prostate cancer cell lines PC3. Photoactivatable-ribonucleoside-enhanced cross-linking immunoprecipitation (PAR-CLIP) was applied to PC3 cells expressing HA-METTL1.Empty vector was used as control. METTL1 was IP using anti-HA antibodies. RNAs bound to METTL1 were extracted and sequenced.
 
Contributor(s) Blanco S, Merkel A, Guil S
Citation(s) 37516825
Submission date Apr 26, 2023
Last update date Aug 08, 2023
Contact name Ana Maria Aransay
E-mail(s) amaransay@cicbiogune.es
Phone 0034944061325
Organization name CIC bioGUNE
Department Genome Analysis Platform
Street address Parque tecnologico de Bizkaia, Building 801-A
City Derio
State/province BIZKAIA
ZIP/Postal code 48160
Country Spain
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (2)
GSM7232727 PC3 cells, Control
GSM7232728 PC3 cells, expressing HA-METTL1
Relations
BioProject PRJNA962138

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE230694_lncRNA_RPM.csv.gz 185.3 Kb (ftp)(http) CSV
GSE230694_miRNA_RPM.csv.gz 8.4 Kb (ftp)(http) CSV
GSE230694_premapping_smRNA_RPM.csv.gz 4.3 Kb (ftp)(http) CSV
GSE230694_protein_coding_RPM.csv.gz 335.7 Kb (ftp)(http) CSV
GSE230694_snoRNA_RPM.csv.gz 8.1 Kb (ftp)(http) CSV
GSE230694_tRNA_RPM.csv.gz 5.4 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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