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Series GSE230724 Query DataSets for GSE230724
Status Public on Apr 30, 2023
Title Transcriptional profiling of EMB+ cells and EMB- cells across long bone and vertebrae
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To compare gene expression profiling of EMB+ cells and EMB- cells whin CD45-Ter119-CD31--Thy1-6C3-CD200+CD105- population across long bone and vertebrae, we isolated related cells form long bone or vertebrae of zic1 -cre mtmg mice by FACS.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for (1)long bone zic1-cre negative CD45-Ter119-CD31--Thy1-6C3-CD200+CD105-EMB+, (2)long bone zic1-cre negative CD45-Ter119-CD31--Thy1-6C3-CD200+CD105-EMB-, (3) vertebrae zic1-cre negative CD45-Ter119-CD31--Thy1-6C3-CD200+CD105-EMB+, (4)vertebrae zic1-cre negative CD45-Ter119-CD31--Thy1-6C3-CD200+CD105-EMB-, (5) vertebrae zic1-cre positive CD45-Ter119-CD31--Thy1-6C3-CD200+CD105-EMB+, (6)vertebrae zic1-cre positive CD45-Ter119-CD31--Thy1-6C3-CD200+CD105-EMB-. Each population has four replicates.
 
Contributor(s) Sun J, Greenblatt M
Citation(s) 37704733
Submission date Apr 27, 2023
Last update date Sep 22, 2023
Contact name Genomics-core-facility WCM
E-mail(s) yit2001@med.cornell.edu
Organization name Weill Cornell Medicine
Street address 1300 York Ave
City New York
State/province New York
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (24)
GSM7233110 verteral Emb-GFP+ biol rep 1 [s161]
GSM7233111 verteral Emb-GFP+ biol rep 2 [s165]
GSM7233112 verteral Emb-GFP+ biol rep 3 [s169]
Relations
BioProject PRJNA962465

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE230724_fpkm.genes.ensembl_id.protein_coding.txt.gz 2.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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