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Series GSE23150 Query DataSets for GSE23150
Status Public on Aug 11, 2010
Title modENCODE_White Lab: genome-wide ChIP data of Trl-D2 from Kc on Illumina Genome Analyzer.
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains genome-wide binding profile of the factor Trl-D2 from Kc generated by ChIP and analyzed on Illumina Genome Analyzer.

Keywords: Epigenetics

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design A validated dataset is comprised of three biological replicates for ChIP-chip experiments and two replicates for ChIP-seq and meet the modENCODE quality standards. The control sample is the chromatin Input used for ChIP. Most factors binding profiles are generated by using specific antibodies for the protein of interest. However, some factors have been tagged by GFP in a transgenic line. In that case, ChIP is generated using an anti-GFP antibody.

This submission represents the ChIP-seq component of the study
Web link http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
 
Contributor(s) Negre N, Bild NA, White KP
Citation(s) 21430782
BioProject PRJNA63463
Submission date Jul 26, 2010
Last update date May 15, 2019
Contact name Kevin P. White
E-mail(s) kpwhite@uchicago.edu
Organization name University of Chicago
Department Institute for Genomics and Systems Biology
Street address 900 E. 57th STR. 10th FL.
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
 
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (2)
GSM570052 K4me3 and Trl-D2_INPUT_1
GSM570054 Trl-D2_ChIPSeq_1
This SubSeries is part of SuperSeries:
GSE23537 modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE23150_RAW.tar 19.3 Mb (http)(custom) TAR (of BED, BEDGRAPH)
SRA Run SelectorHelp
Processed data provided as supplementary file

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