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| Status |
Public on Nov 01, 2024 |
| Title |
Comprehensive analysis of molecular expression differences in NALM6 cells before and after use of verteporfin |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Aims:This study used cell line models and patient datasets to investigate the role of YAP1 in B- ALL.
Methods: We used RNA-Seq to compare the gene expression levels of the Hippo pathway-related molecules before and after verteporfin (VP) treatment to identify important Hippo pathway-related genes in the NALM6 cell line.
Results:we identified a total of 2002 differentially expressed genes in VP and DMSO treatment groups (FC ≥ 1.5, p ≤ 0.05), including 1042 upregulated and 960 downregulated genes, of which 146 were associated with the Hippo signaling pathway. Further screening resulted in 29 identified genes comprising 12 upregulated and 17 downregulated genes, which were associated with VP-treated NALM6 cells.
Conclusion:Pre- and post-VP treatment, the upstream gene LATS1 was upregulated, and its overexpression increased YAP1 Ser127 site phosphorylation further studies.
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| Overall design |
We used RNA-Seq to compare the gene expression levels of the Hippo pathway-related molecules before and after verteporfin (VP) treatment to identify important Hippo pathway-related genes in the NALM6 cell line.
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| Contributor(s) |
Zhang F, Issah MA, Fu H, Zhou H, Liu T, Shen J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 08, 2023 |
| Last update date |
Nov 01, 2024 |
| Contact name |
feng zhang |
| E-mail(s) |
fengzhff886@fjmu.edu.cn
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| Phone |
18950425259
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| Organization name |
Fujian Medical University
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| Street address |
29 Xinquan Road
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| City |
Fuzhou |
| ZIP/Postal code |
350001 |
| Country |
China |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA970287 |
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