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Series GSE23263 Query DataSets for GSE23263
Status Public on Aug 05, 2010
Title mid-L3_25dC_25hrs_post-L1_N2_tiling_array
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Expression profiling by genome tiling array
Summary modENCODE_submission_474
This submission comes from a modENCODE project of Robert Waterston. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

Keywords: Transcript tiling array analysis
 
Overall design EXPERIMENT TYPE: Transcript tiling array analysis. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: larva mid-L3 25dC 26.75 hrs post-L1; Genotype: wild type; Sex: Hermaphrodite; NUMBER OF REPLICATES: 3; EXPERIMENTAL FACTORS: Strain N2; Developmental Stage larva mid-L3 25dC 26.75 hrs post-L1
Web link http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
http://www.modencode.org
 
Contributor(s) Waterston B, Reinke V, Gerstein M, Wilson M, Argiwal A
Citation(s) 21177967
BioProject PRJNA168961
Submission date Jul 28, 2010
Last update date Jan 25, 2024
Contact name DCC modENCODE
E-mail(s) help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL5634 [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array
Samples (3)
GSM571470 L3 25dC 25hrs post-L1 N2 tiling array extraction1_array1
GSM571471 L3 25dC 25hrs post-L1 N2 tiling array extraction2_array1
GSM571472 L3 25dC 25hrs post-L1 N2 tiling array extraction3_array1

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE23263_L3_smooth_log2_winsize110.bedgraph.gz 25.7 Mb (ftp)(http) BEDGRAPH
GSE23263_L3_tars_maxgap30_minrun100_thresh5.82.gff3.gz 1.1 Mb (ftp)(http) GFF3
GSE23263_RAW.tar 112.5 Mb (http)(custom) TAR (of CEL)
Processed data are available on Series record

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