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Series GSE232835 Query DataSets for GSE232835
Status Public on Dec 01, 2023
Title Gene expression profile at single cell level of 72 hpf heart cells from wild-type, tnnt2a mutant, and Tnnt2a degron zebrafish larvae.
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary Heart cells are responsive to cardiac contractions and hemodynamic forces. We use single cell RNA sequencing (scRNA-seq) to compare tnnt2a mutants with Tnnt2a degrons, both conditions leading to cardiac contraction defects.
 
Overall design For each condition, 100 hearts were dissected, dissociated, and analyzed using scRNA-seq.
 
Contributor(s) Juan T, Cardoso B, Athéa H, Fukuda N, Albu M, Günther S, Looso M, Stainier DR
Citation(s) 38194447
Submission date May 18, 2023
Last update date Mar 01, 2024
Contact name Stefan Günther
E-mail(s) stefan.guenther@mpi-bn.mpg.de
Organization name MPI for heart and lung research
Street address ludwigtr. 43
City bad nauheim
ZIP/Postal code 61231
Country Germany
 
Platforms (1)
GPL30614 NextSeq 2000 (Danio rerio)
Samples (3)
GSM7384339 Wild-type
GSM7384340 tnnt2a mutant
GSM7384341 Tnnt2a degron
Relations
BioProject PRJNA974045

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE232835_RAW.tar 61.5 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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