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Series GSE233293 Query DataSets for GSE233293
Status Public on Jun 07, 2023
Title Visium Spatial Transcriptomics expression profiles from IPMN samples of the pancreas
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Intraductal Papillary Mucinous Neoplasms (IPMN) are pancreatic mucinous cysts that can progress to cancer. We used spatial transcriptomics to characterize the epithelium and microenvironment of IPMN samples of different grades and histological subtypes.
Overall design Spatial transcriptomic experiments were conducted on fresh frozen IPMN specimens with the Visium Spatial Gene Expression platform from 10x genomics.
Contributor(s) Sans M, Rajapakshe KI, Guerrero PA, Maitra A
Citation(s) 37285225
Submission date May 24, 2023
Last update date Sep 06, 2023
Contact name Anirban Maitra
Organization name The University of Texas MD Anderson Cancer Center
Department Translational Molecular Pathology
Lab Maitra laboratory
Street address 6565 MD Anderson Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (13)
GSM7421780 LG_1
GSM7421781 LG_2
GSM7421782 LG_3
This SubSeries is part of SuperSeries:
GSE233254 Spatial Transcriptomics of Intraductal Papillary Mucinous Neoplasms of The Pancreas Identifies NKX6-2 Expression as a Driver of Gastric Differentiation and Indolent Biological Potential
BioProject PRJNA975814

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Supplementary file Size Download File type/resource 118.6 Mb (ftp)(http) RDS
GSE233293_RAW.tar 216.0 Mb (http)(custom) TAR (of H5, TAR) 603.9 Mb (ftp)(http) RDS 126.0 Mb (ftp)(http) RDS
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Processed data provided as supplementary file

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