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| Status |
Public on Jun 07, 2023 |
| Title |
Visium Spatial Transcriptomics expression profiles from IPMN samples of the pancreas |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Intraductal Papillary Mucinous Neoplasms (IPMN) are pancreatic mucinous cysts that can progress to cancer. We used spatial transcriptomics to characterize the epithelium and microenvironment of IPMN samples of different grades and histological subtypes.
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| |
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| Overall design |
Spatial transcriptomic experiments were conducted on fresh frozen IPMN specimens with the Visium Spatial Gene Expression platform from 10x genomics.
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| Contributor(s) |
Sans M, Rajapakshe KI, Guerrero PA, Maitra A |
| Citation(s) |
37285225 |
| |
| Submission date |
May 24, 2023 |
| Last update date |
Sep 06, 2023 |
| Contact name |
Anirban Maitra |
| E-mail(s) |
AMaitra@mdanderson.org
|
| Organization name |
The University of Texas MD Anderson Cancer Center
|
| Department |
Translational Molecular Pathology
|
| Lab |
Maitra laboratory
|
| Street address |
6565 MD Anderson Blvd
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (13)
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| This SubSeries is part of SuperSeries: |
| GSE233254 |
Spatial Transcriptomics of Intraductal Papillary Mucinous Neoplasms of The Pancreas Identifies NKX6-2 Expression as a Driver of Gastric Differentiation and Indolent Biological Potential |
|
| Relations |
| BioProject |
PRJNA975814 |
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