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Series GSE233317 Query DataSets for GSE233317
Status Public on Jun 07, 2023
Title Visium Spatial Transcriptomics of a murine model of IPMN
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Pancreata were collected from two Kras;Gnas mice and analyzed by Visium Spatial Gene Expression to evaluate the transcriptional profile associated with NKX6-2 that was observed in the human IPMN samples.
Overall design Samples were collected from mice at 15 and 25 weeks post doxycycline treatment and were flash frozen. The samples were then cryosectioned and analyzed with the Visium Spatial Gene Expression platform from 10x genomics.
Contributor(s) Sans M, Rajapakshe KI, Makino Y, Min J, Guerrero PA, Maitra A
Citation(s) 37285225
Submission date May 24, 2023
Last update date Sep 06, 2023
Contact name Anirban Maitra
Organization name The University of Texas MD Anderson Cancer Center
Department Translational Molecular Pathology
Lab Maitra laboratory
Street address 6565 MD Anderson Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (2)
GSM7422460 pancreas, Dox_15wks
GSM7422461 pancreas , Dox_25wks
This SubSeries is part of SuperSeries:
GSE233254 Spatial Transcriptomics of Intraductal Papillary Mucinous Neoplasms of The Pancreas Identifies NKX6-2 Expression as a Driver of Gastric Differentiation and Indolent Biological Potential
BioProject PRJNA975858

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE233317_GNASmouse_onlydox_merge.rds.gz 286.8 Mb (ftp)(http) RDS
GSE233317_RAW.tar 102.2 Mb (http)(custom) TAR (of H5, TAR)
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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