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Series GSE234093 Query DataSets for GSE234093
Status Public on Jun 07, 2023
Title Genome-wide host loci regulate M. tuberculosis fitness in immunodivergent mice.
Organism Mycobacterium tuberculosis H37Rv
Experiment type Other
Summary The factors that determine the outcome of clinical tuberculosis lie within both the host and the pathogen, Mycobacterium tuberculosis (Mtb). The advent of recombinant inbred mouse panels and next-generation transposon mutagenesis and sequencing approaches has enabled dissection of the host-pathogen interface for mammalian and pathogen genetic determinants of disease outcome. To identify host and pathogen genetic drivers of Mtb infection, we infected 19 genotypes from the BXD panel, bred from Mtb-resistant C57BL/6J (B6) and Mtb-susceptible DBA/2J (D2), with a comprehensive library of transposon mutants (TnSeq). The survival of each of the ~4000 bacterial mutants within each distinct host was quantified and leveraged as refined “endophenotypes”, directly reporting on the infection microenvironment. We leveraged QTL mapping to associate each varying bacterial fitness endophenotype to the host genome and identified 140 significant host-pathogen quantitative trait loci (hpQTL). This host-pathogen interaction screen reinforces the utility of bacterial mutant libraries as precise reporters of host immunological microenvironment during infection and highlights host gene candidates for further investigation.
Overall design Subject mice (19 BXD strains, C57BL/6J, and DBA/2J) were infected via tail vein injection with a saturated M. tuberculosis Himar1 transposon library. Animals were sacrificed after 4 weeks, and TnSeq was performed after library recovery from harvested spleens. In the majority of cases, two replicates were obtained per mouse strain, 5 replicates in the case of in vitro-cultured libraries.
Contributor(s) Meade RK, Long JE, Jinich A, Rhee KY, Ashbrook DG, Williams RW, Sassetti CM, Smith CM
Citation(s) 37405387
Submission date Jun 05, 2023
Last update date Sep 07, 2023
Contact name Clare Smith
Organization name Duke University
Department MGM
Lab Smith Lab
Street address 207 Research Drive
City Durham
State/province North Carolina
ZIP/Postal code 27710
Country USA
Platforms (1)
GPL20677 Illumina HiSeq 2500 (Mycobacterium tuberculosis H37Rv)
Samples (45)
GSM7445645 C57BL.6J_rep1
GSM7445646 C57BL.6J_rep2
GSM7445647 DBA.2J_rep1
BioProject PRJNA980099

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Supplementary file Size Download File type/resource
GSE234093_RAW.tar 11.9 Mb (http)(custom) TAR (of TXT)
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Raw data are available in SRA
Processed data provided as supplementary file

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