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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 07, 2023 |
| Title |
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38632339 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R35 GM138150 |
Epigenesis of Cell Fate Potential |
UNIVERSITY OF CHICAGO |
Andrew S Koh |
|
| BioProject |
PRJNA971212 |
| |
| Submission date |
Jun 06, 2023 |
| Last update date |
May 31, 2024 |
| Contact name |
Alexandra Bradu |
| E-mail(s) |
abradu@uchicago.edu
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| Organization name |
University Of Chicago
|
| Department |
Pathology
|
| Lab |
Koh Lab
|
| Street address |
924 East 57th Street
|
| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
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| Platforms (2) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (104)
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| GSM7465187 |
DN2a thymocytes, rep 2 |
| GSM7465188 |
DN3 thymocytes, rep 1 |
| GSM7465189 |
DN3 thymocytes, rep 2 |
| GSM7465190 |
DN4 thymocytes, rep 1 |
| GSM7465191 |
DN4 thymocytes, rep 2 |
| GSM7465192 |
DP thymocytes, rep 1 |
| GSM7465193 |
DP thymocytes, rep 2 |
| GSM7465194 |
CD8 SP T cells, rep 1 |
| GSM7465195 |
CD8 SP T cells, rep 2 |
| GSM7465196 |
CD8 Naïve T cells, rep 1 |
| GSM7465197 |
CD8 Naïve T cells, rep 2 |
| GSM7465198 |
CD8 Activated T cells, rep 1 |
| GSM7465199 |
CD8 Activated T cells, rep 2 |
| GSM7465200 |
CD4 SP T cells, rep 1 |
| GSM7465201 |
CD4 Naïve T cells, rep 1 |
| GSM7465202 |
CD4 Activated T cells, rep 1 |
| GSM7465203 |
DN1 thymocytes, DMSO-treated, rep 1 |
| GSM7465204 |
DN1 thymocytes, DMSO-treated, rep 2 |
| GSM7465205 |
DN1 thymocytes, FK506-treated, rep 1 |
| GSM7465206 |
DN1 thymocytes, FK506-treated, rep 2 |
| GSM7465207 |
DN2 thymocytes, DMSO-treated, rep 1 |
| GSM7465208 |
DN2 thymocytes, FK506-treated, rep 1 |
| GSM7465209 |
DN3 thymocytes, DMSO-treated, rep 1 |
| GSM7465210 |
DN3 thymocytes, FK506-treated, rep 1 |
| GSM7465211 |
DN1 thymocytes, Smarca4 WT, rep 1 |
| GSM7465212 |
DN1 thymocytes, Smarca4 WT, rep 2 |
| GSM7465213 |
DN1 thymocytes, Smarca4 WT, rep 3 |
| GSM7465214 |
DN1 thymocytes, Smarca4 cKO, rep 1 |
| GSM7465215 |
DN1 thymocytes, Smarca4 cKO, rep 2 |
| GSM7465216 |
DN1 thymocytes, Smarca4 cKO, rep 3 |
| GSM7465217 |
DN2 thymocytes, Smarca4 WT, rep 1 |
| GSM7465218 |
DN2 thymocytes, Smarca4 WT, rep 2 |
| GSM7465219 |
DN2 thymocytes, Smarca4 WT, rep 3 |
| GSM7465220 |
DN2 thymocytes, Smarca4 cKO, rep 1 |
| GSM7465221 |
DN2 thymocytes, Smarca4 cKO, rep 2 |
| GSM7465222 |
DN2 thymocytes, Smarca4 cKO, rep 3 |
| GSM7465223 |
DN3 thymocytes, Smarca4 WT, rep 1 |
| GSM7465224 |
DN3 thymocytes, Smarca4 WT, rep 2 |
| GSM7465225 |
DN3 thymocytes, Smarca4 cKO, rep 1 |
| GSM7465226 |
DN3 thymocytes, Smarca4 cKO, rep 2 |
| GSM7465227 |
DN2 thymocytes, Bcl11b WT, rep 1 |
| GSM7465228 |
DN2 thymocytes, Bcl11b WT, rep 2 |
| GSM7465229 |
DN2 thymocytes, Bcl11b cKO, rep 1 |
| GSM7465230 |
DN2 thymocytes, Bcl11b cKO, rep 2 |
| GSM7465231 |
DN3 thymocytes, Bcl11b WT, rep 1 |
| GSM7465232 |
DN3 thymocytes, Bcl11b WT, rep 2 |
| GSM7465233 |
DN3 thymocytes, Bcl11b cKO, rep 1 |
| GSM7465234 |
DN3 thymocytes, Bcl11b cKO, rep 2 |
| GSM7465235 |
DN1 thymocytes, Runx1 WT, rep 1 |
| GSM7465236 |
DN1 thymocytes, Runx1 WT, rep 2 |
| GSM7465237 |
DN1 thymocytes, Runx1 cKO, rep 1 |
| GSM7465238 |
DN1 thymocytes, Runx1 cKO, rep 2 |
| GSM7465239 |
DN2 thymocytes, Runx1 WT, rep 1 |
| GSM7465240 |
DN2 thymocytes, Runx1 WT, rep 2 |
| GSM7465241 |
DN2 thymocytes, Runx1 cKO, rep 1 |
| GSM7465242 |
DN2 thymocytes, Runx1 cKO, rep 2 |
| GSM7465243 |
DN3 thymocytes, Runx1 WT, rep 1 |
| GSM7465244 |
DN3 thymocytes, Runx1 WT, rep 2 |
| GSM7465245 |
DN3 thymocytes, Runx1 cKO, rep 1 |
| GSM7465246 |
DN3 thymocytes, Runx1 cKO, rep 2 |
| GSM7465247 |
BAF155, DN2 thymocytes, Bcl11b WT, rep 1 |
| GSM7465248 |
BAF155, DN2 thymocytes, Bcl11b WT, rep 2 |
| GSM7465249 |
BAF155, DN2 thymocytes, Bcl11b cKO, rep 1 |
| GSM7906510 |
ATAC-seq, DN1 thymocytes, Runx1 cKO, rep 3 |
| GSM7906511 |
ATAC-seq, DN2 thymocytes, Runx1 cKO, rep 3 |
| GSM7906512 |
ATAC-seq, DN3 thymocytes, Runx1 cKO, rep 3 |
| GSM7906513 |
ATAC-seq, DN1 thymocytes, Runx1 WT, rep 3 |
| GSM7906514 |
ATAC-seq, DN2 thymocytes, Runx1 WT, rep 3 |
| GSM7906515 |
ATAC-seq, DN3 thymocytes, Runx1 WT, rep 3 |
| GSM7906516 |
anti-BAF155 CUT&RUN, DN2 and DN3 thymocytes, Bcl11b cKO, rep 3 |
| GSM7906517 |
anti-BAF155 CUT&RUN, DN2 and DN3 thymocytes, Bcl11b cKO, rep 4 |
| GSM7906518 |
anti-BAF155 CUT&RUN, DN2 and DN3 thymocytes, Bcl11b WT, rep 3 |
| GSM7906519 |
anti-BAF155 CUT&RUN, DN2 and DN3 thymocytes, Bcl11b WT, rep 4 |
| GSM7906520 |
anti-BAF155 CUT&RUN, DN1 thymocytes, Runx1 cKO, rep 1 |
| GSM7906521 |
anti-BAF155 CUT&RUN, DN1 thymocytes, Runx1 cKO, rep 2 |
| GSM7906522 |
anti-BAF155 CUT&RUN, DN2 and DN3 thymocytes, Runx1 cKO, rep 1 |
| GSM7906523 |
anti-BAF155 CUT&RUN, DN2 and DN3 thymocytes, Runx1 cKO, rep 2 |
| GSM7906524 |
anti-BAF155 CUT&RUN, DN1 thymocytes, Runx1 WT, rep 1 |
| GSM7906525 |
anti-BAF155 CUT&RUN, DN1 thymocytes, Runx1 WT, rep 2 |
| GSM7906526 |
anti-BAF155 CUT&RUN, DN2 and DN3 thymocytes, Runx1 WT, rep 1 |
| GSM7906527 |
anti-BAF155 CUT&RUN, DN2 and DN3 thymocytes, Runx1 WT, rep 2 |
| GSM7906591 |
Runx1 WT DN1 thymocytes Rep1 |
| GSM7906592 |
Runx1 cKO DN1 thymocytes Rep1 |
| GSM7906593 |
Runx1 WT DN1 thymocytes Rep2 |
| GSM7906594 |
Runx1 cKO DN1 thymocytes Rep2 |
| GSM7906595 |
Runx1 WT DN2 thymocytes Rep1 |
| GSM7906596 |
Runx1 cKO DN2 thymocytes Rep1 |
| GSM7906597 |
Runx1 WT DN2 thymocytes Rep2 |
| GSM7906598 |
Runx1 cKO DN2 thymocytes Rep2 |
| GSM7906599 |
Runx1 WT DN3 thymocytes Rep1 |
| GSM7906600 |
Runx1 cKO DN3 thymocytes Rep1 |
| GSM7906601 |
Runx1 WT DN3 thymocytes Rep2 |
| GSM7906602 |
Runx1 cKO DN3 thymocytes Rep2 |
| GSM7906603 |
Smarca4 WT DN1 thymocytes Rep1 |
| GSM7906604 |
Smarca4 cKO DN1 thymocytes Rep1 |
| GSM7906605 |
Smarca4 WT DN1 thymocytes Rep2 |
| GSM7906606 |
Smarca4 cKO DN1 thymocytes Rep2 |
| GSM7906607 |
Smarca4 WT pooled DN2 and DN3 thymocytes Rep1 |
| GSM7906608 |
Smarca4 cKO pooled DN2 and DN3 thymocytes Rep1 |
| GSM7906609 |
Smarca4 WT pooled DN2 and DN3 thymocytes Rep2 |
| GSM7906610 |
Smarca4 cKO pooled DN2 and DN3 thymocytes Rep2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE234329 |
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape [ATAC-seq] |
| GSE234330 |
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape [CUT&RUN] |
| GSE248159 |
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape [RNA-seq] |
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