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Series GSE234377 Query DataSets for GSE234377
Status Public on Dec 01, 2023
Title ideas-IDEAS project on nitrogen starvation
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary ngs2020_20_ideas-ideas- whole genome (nuclear and organellar) transcriptomic response to a moderate nitrogen starvation-In the IDEAS project, Arabidopsis thaliana Col0 plants were grown on soil from seed for 19 days on the Phenoscope (IJPB, Versailles). The plants were watered with nitrogen-sufficient or nitrogen-limiting solutions. 10 biological replicates were produced. For each sample, 3 rosettes were pooled to extract RNA. The libraries were generated with the Illumina Truseq stranded with ribozero plant leaf and sequenced on a NextSeq500 in single-end 75 bases.
 
Overall design 20 samples with 5 biological replicats. treated vs untreated comparison
Web link http://tools.ips2.u-psud.fr/CATdb
 
Contributor(s) Alaunay A, Delannoy E, Rameau C, Rigaill G
Citation(s) 37954572
Submission date Jun 07, 2023
Last update date Dec 02, 2023
Contact name VĂ©ronique BRUNAUD
E-mail(s) veronique.brunaud@inrae.fr
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (20)
GSM7466400 N-limiting_1
GSM7466401 N-limiting_10
GSM7466402 N-limiting_2
Relations
BioProject PRJNA981151

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE234377_RAW.tar 2.4 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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