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Series GSE235019 Query DataSets for GSE235019
Status Public on Jun 22, 2023
Title Human HFF cells large rearranements detection after CRISPR-Cas9 nuclease (Fig.2c)
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Genome variation profiling by SNP array
Summary ABRAXAS2 gene editing by CRISPR-Cas9 nuclease in heterozygous HFF for UROS inactivation. Fluorescent positive cell sorting for UROS and large rearrangements confirmation in chromosome 10q.
Overall design Three-condition experiment,edited HFF vs Agilent control DNA or control HFF. Fluorescent positive cell bulk and two fluorescent-positive clones, #1 and #2 after ABRAXAS2 gene editing.
Contributor(s) Boutin J, Pennamen P
Citation(s) 37429857
Submission date Jun 15, 2023
Last update date Sep 12, 2023
Contact name Julian Boutin
Organization name INSERM U1312 BRIC
Lab BioGO team 8
Street address 146 rue Leo Saignat
City Bordeaux
State/province Nouvelle Aquitaine
ZIP/Postal code 33000
Country France
Platforms (2)
GPL17052 Agilent-021924 SurePrint G3 Human CGH Microarray 8x60K (Probe Name version)
GPL33494 Agilent-085591 Human 180K CGH+SNP
Samples (3)
GSM7493282 HFF ABRAXAS2 transfected CGH bulk
GSM7493283 HFF ABRAXAS2 transfected CGH clone 1 (del terminale)
GSM7493284 HFF ABRAXAS2 transfected CGH clone 3 (CN + dup)
BioProject PRJNA984190

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE235019_Figure_2c_Nat_com_2023.xlsx 325.6 Kb (ftp)(http) XLSX
GSE235019_RAW.tar 43.3 Mb (http)(custom) TAR (of TXT)
Processed data are available on Series record

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