NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE236364 Query DataSets for GSE236364
Status Public on Nov 29, 2023
Title Coloration differences in three Camellia reticulata Lindl. varieties: ‘Tongzimian’, ‘Shizitou’ and ‘Manao’
Organism Camellia reticulata
Experiment type Expression profiling by high throughput sequencing
Summary Our results revealed that the initial flowering stage plays a critical role in the color change of MN. Metabolome analysis demonstrated that cyanidin was the primary anthocyanin in SZT and MN’s red region, while its content was low in TZM and MN’s white region. According to the transcriptome analysis, the anthocyanins biosynthesis pathway was reconstructed in Yunnan Camellia, and the low expression of CHS was detected in TZM and MN’s white region, while ANR maintained a high expression level, which may lead to the low content of cyanidin in them. Transcription factors MYBs, bHLH, and bZIP may play a key role in regulating anthocyanin-structural genes. The co-expression analysis showed that the meristem tissue may play a crucial role in the formation of the mixed white-red color in MN.
 
Overall design We conducted metabolic and transcriptomic comparison analysis to investigate the coloration differences in three Yunnan Camellia species: C. reticulata ‘Shizitou’ (SZT), C. reticulata ‘Manao’ (MN), and C. reticulata ‘Tongzimian’ (TZM).
 
Citation(s) 38166751
BioProject PRJNA966750
Submission date Jul 03, 2023
Last update date Jan 16, 2024
Contact name Yan Qu
E-mail(s) quyan@swfu.edu.cn
Organization name Southwest Forestry University
Street address Kunming
City Kunming
ZIP/Postal code 650000
Country China
 
Platforms (1)
GPL33543 Illumina HiSeq 4000 (Camellia reticulata)
Samples (27)
GSM7528571 TZM_Bud_1
GSM7528572 TZM_Bud_2
GSM7528573 TZM_Bud_3

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE236364_Mixed_camellia.fa.gz 51.3 Mb (ftp)(http) FA
GSE236364_gene_FPKM.txt.gz 7.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap