NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE236739 Query DataSets for GSE236739
Status Public on Jan 16, 2024
Title Acetylation of the activated glucocorticoid receptor facilitates its proteasomal degradation thereby limiting hormonal signaling
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The glucocorticoid (GC) receptor (GR) is a ligand-induced transcription factor regulating metabolism and inflammation. While homologous downregulation of ligand-bound GR limits the response, it also reduces hormone responsiveness resulting in glucocorticoid resistance. Regulatory mechanisms that refine this equilibrium are less understood. Here, we have identified seven lysine acetylation sites in the amino terminal domain of GR, lysine 154 within the regulatory AF-1 region being the dominant acetyl-acceptor. GR-Lys154 acetylation is mediated by p300/CBP in an exclusively agonist-induced manner and correlates with nuclear translocation and transcriptional activity. GR-Lys154 acetylation is removed by the NAD+ dependent deacetylase, SIRT1, indicating dynamic regulation of this mark. Notably, agonist-binding to both the wild type and acetylation-deficient mutant GR elicits similar short-term target gene expression. In contrast, upon extended treatment, the acetylation-deficient mutant shows impaired ubiquitination and higher protein stability with a concomitant increase in chromatin association and transactivation. Taken together, p300/CBP and SIRT1 fine-tune glucocorticoid response by siphoning acetylated GR for proteasomal degradation while GR deacetylation sustains the transcriptional cascade for prolonged periods.
 
Overall design To determine the impact of GR-Lys154 acetylation on Dex-dependent regulation of target gene expression, we performed RNA sequencing in cells expressing wildtype (WT), acetylation-deficient (K154R) or acetylation -mimetic (K154Q) GR. For this, we used CRISPR/Cas9 to knock out endogenous GR (gene: NR3C1) in HepG2 cells to generate HepG2 GR-/-.Subsequently, we transduced these cells with doxycycline-inducible psedotyped lentiviral constructs harboring cDNAs for Ty1-tagged WT-, K154R- and K154Q-GR respectively. Cells were induced with doxycycline to express the variants of GR followed by treatment with vehicle or 1 µM Dex for 6 hours before harvesting, RNA isolation, library preparation and sequencing. For each genotype, four biological replicates indicate two independent experiments with two independent transductions each.
 
Contributor(s) Iyer-Bierhoff A, Wieczorek M, Peter S, Ward D, Bens M, Vettorazzi S, Gührs K, Tuckermann JP, Heinzel T
Citation(s) 38333702
Submission date Jul 06, 2023
Last update date Feb 15, 2024
Contact name Marco Groth
E-mail(s) cfngs@leibniz-fli.de
Organization name Leibniz Institute on Aging - FLI
Department Core Facility - Next Generation Sequencing
Street address Beutenbergstraße 11
City Jena
ZIP/Postal code 07747
Country Germany
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (24)
GSM7574783 WT_veh_1
GSM7574784 WT_dex_1
GSM7574785 K154R_veh_1
Relations
BioProject PRJNA992115

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE236739_raw_counts.csv.gz 1.6 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap