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Series GSE23691 Query DataSets for GSE23691
Status Public on Feb 08, 2011
Title Mapping of H3K4 and H3K27 trimethylation in zebrafish cells (ChIP-chip)
Organism Danio rerio
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary The genomic distribution of post-translationally modified histones in the zebrafish (Danio rerio) genome remain largely unraveled. The objective of this study was to (1) design a microarray covering all zebrafish gene promoters and 5' end of coding regions, and (ii) using these arrrays, map the genome-wide distribution of trimethylated H3K4 and H3K27 in the mbryo derived ZF4 cell line. Specifically, we determined teh enrichment profile of H3K4me3, H3K27me3 and of both (co-enriched) modifications in ZF4 cells. We determined average enrichment profiles through metagene analysis, functional terms enriched among genes marked by either modification, and pathway analysis.
Overall design ChIP-chip experiments were performed from duplicate cultures
Contributor(s) Collas P, Reiner AH, Lindeman L
Citation(s) 21187971
Submission date Aug 18, 2010
Last update date Mar 22, 2012
Contact name Philippe Collas
Organization name University of Oslo
Department Institute of Basic Medical Sciences
Street address PO Box 1112 Blindern
City Oslo
ZIP/Postal code 0317
Country Norway
Platforms (1)
GPL10835 090313_Zv7_PC_ChIP_HX1
Samples (4)
GSM581033 ZF4_H3K4me3_Repl1
GSM581034 ZF4_H3K4me3_Repl2
GSM581035 ZF4_H3K27me3_Repl1
This SubSeries is part of SuperSeries:
GSE23872 Mapping of H3K4 and H3K27 trimethylation in zebrafish cells
BioProject PRJNA133135

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE23691_RAW.tar 435.1 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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