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Series GSE24109 Query DataSets for GSE24109
Status Public on May 26, 2011
Title Antagonistic role of MBNL1 and LIN28 promotes specific alteration of pre-miR-1 processing and is associated with heart defects in DM
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Myotonic dystrophy type 1 (DM1), the most common muscular dystrophy in adults, is caused by the expression of expanded CUG repeats, which sequester the MBNL1 RNA binding protein. Cardiac involvement, which is characterized by conduction defects and arrhythmias, is the second cause of death of DM1 patients. Down-expression of miR-1 in mice leads to cardiac conduction disturbances and to arrhythmias. Here, we show that miR-1 expression is decreased in DM1 hearts, due to a mis-regulation of the processing of pre-miR-1. MBNL1 binds to UGC motifs located within the pre-miR-1 loop and competes binding of LIN28, which promotes uridylation and blocks pre-miR-1 processing. Finally and consistent with a down-regulation of miR-1, known, GJA1, and novel, CACNA1C, targets of miR-1 are increased in DM1 hearts. CACNA1C and GJA1 encode the main calcium and gap junction channels in heart, respectively, and their mis-regulation may contribute to the heart arrythmias and conduction defects observed in DM1 patients.
 
Overall design Total RNA of 3 control and 3 CDM1 primary culture of muscle cells differentiated 10 days into myotubes was extracted using Trizol and analyzed by Agilent microarray.
 
Contributor(s) Rau F, Charlet-Berguerand N
Citation(s) 21685920
Submission date Sep 13, 2010
Last update date Jan 23, 2013
Contact name Doulaye Dembele
E-mail(s) doulaye@igbmc.fr
Phone +33 3 88 65 35 28
Organization name IGBMC
Department Biopuces
Street address 1 rue Laurent Fries
City Illkirch
ZIP/Postal code 67400
Country France
 
Platforms (1)
GPL7731 Agilent-019118 Human miRNA Microarray 2.0 G4470B (Feature Number version)
Samples (6)
GSM593305 Control 1
GSM593306 Control 2
GSM593307 Control 3
Relations
BioProject PRJNA130201

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE24109_RAW.tar 11.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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