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Series GSE242343 Query DataSets for GSE242343
Status Public on Dec 01, 2023
Title Gene expression profile at single cell level on cells from the lungs of mice infected with Mycobacterium tuberculosis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We used single-cell RNA sequencing (scRNAseq) to compare cells from the lungs of Mycobacterium tuberculosis infected mice between C57BL/6J mice and a cohort of wild-derived mouse lines MANA, MANB and MANC (Jackson Laboratories: ManA/NachJ #035354; ManB/NachJ #035355).
Overall design Lung lobes were pooled from five infected mice per genotype and cells were isolated for analysis by scRNAseq.
Contributor(s) Stanley SA, Ravesloot-Chavez MM
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Submission date Sep 05, 2023
Last update date Dec 01, 2023
Contact name Marietta Milou Ravesloot-Chavez
Organization name University of California Berkeley
Department Plant and Microbial Biology
Lab Sarah Stanley
Street address 500E Li Ka Shing, 1951 Oxford St
City Berkeley
State/province Alameda
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM7759620 B6, scRNAseq
GSM7759621 MANA, scRNAseq
GSM7759622 MANB, scRNAseq
BioProject PRJNA1013376

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE242343_Expression_meta_data1_Allsamples.tsv.gz 84.9 Kb (ftp)(http) TSV
GSE242343_RAW.tar 107.7 Mb (http)(custom) TAR (of MTX, TSV)
GSE242343_Raw_counts_matrix_Allsamples.tsv.gz 21.5 Mb (ftp)(http) TSV
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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