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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 15, 2024 |
| Title |
ETS1, a target gene of the EWSR1::FLI1 fusion oncoprotein, regulates the expression of the focal adhesion protein TENSIN3 |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://aacrjournals.org/mcr/article/22/7/625/746058/ETS1-a-Target-Gene-of-the-EWSR1-FLI1-Fusion
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| Citation(s) |
38588446, 38187702 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| ZIA BC011704 |
Discovery of genes required for expression or activity of fusion oncogenes |
National Cancer Institute - Division of Basic Sciences |
Natasha Caplen |
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| |
| Submission date |
Sep 14, 2023 |
| Last update date |
Jul 15, 2024 |
| Contact name |
Natasha J Caplen |
| Organization name |
National Institutes of Health
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| Department |
National Cancer Institute
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| Lab |
Functional Genetics
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| Street address |
37 Convent Drive, Bldg. 37, Rm 6128
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| City |
Bethesda |
| State/province |
Maryland |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platforms (1) |
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| Samples (63)
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| GSM7780179 |
TC-32 siNEG, ETS1, rep 2 |
| GSM7780180 |
TC-32 siFLI1, Input, rep 1 |
| GSM7780181 |
TC-32 siFLI1, Input, rep 2 |
| GSM7780182 |
TC-32 siFLI1, ETS1, rep 1 |
| GSM7780183 |
TC-32 siFLI1, ETS1, rep 2 |
| GSM7780184 |
TC-32 siNEG, Input, rep 1_I |
| GSM7780185 |
TC-32 siNEG, Input, rep 2_II |
| GSM7780186 |
TC-32 siNEG, H3K27ac, rep 1_I |
| GSM7780187 |
TC-32 siNEG, H3K27ac, rep 2_II |
| GSM7780188 |
TC-32 siNEG, H3K4me3, rep 1 |
| GSM7780189 |
TC-32 siNEG, H3K4me3, rep 2 |
| GSM7780192 |
TC-32 siFLI1, Input, rep 1_I |
| GSM7780193 |
TC-32 siFLI1, Input, rep 2_II |
| GSM7780194 |
TC-32 siFLI1, H3K27ac, rep 1 |
| GSM7780195 |
TC-32 siFLI1, H3K27ac, rep 2 |
| GSM7780196 |
TC-32 siFLI1, H3K4me3, rep 1 |
| GSM7780197 |
TC-32 siFLI1, H3K4me3, rep 2 |
| GSM7780321 |
TC-32 siNEG, rep 1 |
| GSM7780322 |
TC-32 siNEG, rep 2 |
| GSM7780323 |
TC-32 siNEG, rep 3 |
| GSM7780324 |
TC-32 siFLI1, rep 1 |
| GSM7780325 |
TC-32 siFLI1, rep 2 |
| GSM7780326 |
TC-32 siFLI1, rep 3 |
| GSM7780327 |
TC-71 siNEG, rep 1 |
| GSM7780328 |
TC-71 siNEG, rep 2 |
| GSM7780329 |
TC-71 siNEG, rep 3 |
| GSM7780330 |
TC-71 siFLI1, rep 1 |
| GSM7780331 |
TC-71 siFLI1, rep 2 |
| GSM7780332 |
TC-71 siFLI1, rep 3 |
| GSM7780333 |
A673 siNEG, rep 1 |
| GSM7780334 |
A673 siNEG, rep 2 |
| GSM7780335 |
A673 siNEG, rep 3 |
| GSM7780336 |
A673 siFLI1, rep 1 |
| GSM7780337 |
A673 siFLI1, rep 2 |
| GSM7780338 |
A673 siFLI1, rep 3 |
| GSM7782750 |
TC-32 WT, A, IgG, rep 1 |
| GSM7782751 |
TC-32 WT, A, IgG, rep 2 |
| GSM7782752 |
TC-32 WT, A, FLI1, rep 1 |
| GSM7782753 |
TC-32 WT, A, FLI1, rep 2 |
| GSM7782754 |
TC-32 WT, A, H3K27ac, rep 1 |
| GSM7782755 |
TC-32 WT, A, H3K27ac, rep 2 |
| GSM7782756 |
TC-32 WT, B, IgG, rep 1 |
| GSM7782757 |
TC-32 WT, B, IgG, rep 2 |
| GSM7782758 |
TC-32 WT, B, FLI1, rep 1 |
| GSM7782759 |
TC-32 WT, B, FLI1, rep 2 |
| GSM7782760 |
TC-32 WT, B, H3K9me3, rep 1 |
| GSM7782761 |
TC-32 WT, B, H3K9me3, rep 2 |
| GSM7782762 |
TC-32 WT, B, H3K27me3, rep 1 |
| GSM7782763 |
TC-32 WT, B, H3K27me3, rep 2 |
| GSM7782764 |
TC32, pLOC RFP, Rep 1 |
| GSM7782765 |
TC32, pLOC RFP, Rep 2 |
| GSM7782766 |
TC32, pLOC RFP, Rep 3 |
| GSM7782767 |
TC32, pLOC ETS1-Low, Rep 1 |
| GSM7782768 |
TC32, pLOC ETS1-Low, Rep 2 |
| GSM7782769 |
TC32, pLOC ETS1-Low, Rep 3 |
| GSM7782770 |
TC32, pLOC ETS1-High, Rep 1 |
| GSM7782771 |
TC32, pLOC ETS1-High, Rep 2 |
| GSM7782772 |
TC32, pLOC ETS1-High, Rep 3 |
| GSM7980901 |
TC-32 siNEG, H3K27ac, rep 1a |
| GSM7980902 |
TC-32 siFLI1, H3K27ac, rep 1a |
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| This SuperSeries is composed of the following SubSeries:
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| GSE243171 |
EWSR1::FLI1 fusion oncoproteins’ regulation of ETS1 (ChIP-seq) |
| GSE243183 |
EWSR1::FLI1 fusion oncoproteins’ regulation of ETS1 (RNA-seq) |
| GSE243277 |
EWSR1::FLI1 fusion oncoproteins’ regulation of ETS1 (CUT&RUN) |
| GSE243279 |
EWSR1::FLI1 fusion oncoproteins’ regulation of ETS1 (RNA-seq) |
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| Relations |
| BioProject |
PRJNA1017350 |
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