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| Status |
Public on Nov 29, 2023 |
| Title |
Spatial transcriptomics reveal signatures of histopathological changes in muscular sarcoidosis |
| Organism |
Homo sapiens |
| Experiment type |
Other
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| Summary |
Sarcoidosis is a multisystemic disease characterized by non-caseating granuloma infiltrating various organs. The form with symptomatic muscular involvement is called muscular sarcoidosis. The impact of immune cells composing the granuloma on the skeletal muscle is misunderstood. Here, we investigated the granuloma-skeletal muscle interactions through spatial transcriptomics. Five major transcriptomic clusters corresponding to perigranuloma, granuloma, and three successive muscle tissue areas (proximal, intermediate and distal) around the granuloma were identified. Analyses revealed upregulated pathways in the granuloma corresponding to the activation of T-lymphocytes and monocytes/macrophages cytokines and upregulation of extracellular matrix signatures and induction of the TGF-β signaling in the perigranuloma. Comparison between proximal and distal muscles to the granuloma revealed an inverse correlation between distance to the granuloma and upregulation of cellular response to interferon-γ/α, TNF-α, IL-1,4,6, fibroblast proliferation, epithelial to mesenchymal cell transition and downregulation of muscle gene expression.
These data shed light on the intercommunications between granulomas and the muscle tissue and provides pathophysiological mechanisms by showing that granuloma immune-cells have a direct impact on proximal muscle tissue by promoting its progressive replacement by fibrosis via the expression of pro-inflammatory and pro-fibrosing signatures. These data could possibly explain the evolution towards a state of disability for some patients.
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| Overall design |
We perform Visium v1 on two FFPE slides from patients identified for granulomatous myositis associated with multisystemic sarcoidosis.
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| Contributor(s) |
Lequain H, Dégletagne C, Streichenberger N, Valantin J, Simonet T, Schaeffer L, Sève P, Leblanc P |
| Citation(s) |
38067175 |
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| Submission date |
Sep 14, 2023 |
| Last update date |
Dec 14, 2023 |
| Contact name |
Cyril Degletagne |
| E-mail(s) |
cyril.degletagne@gmail.com
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| Organization name |
Alfred Wegener Institute
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| Department |
Functional Ecology
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| Street address |
Am Handelshafen
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| City |
Bremerhaven |
| ZIP/Postal code |
27568 |
| Country |
Germany |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA1017545 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE243291_RAW.tar |
86.0 Mb |
(http)(custom) |
TAR (of CSV, JPG, JSON, MTX, PNG, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
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