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GEO accession:
Series GSE246062
Query DataSets for GSE246062
Status
Public on Mar 12, 2024
Title
Shared and distinct interactions of Epstein-Barr Nuclear Antigen 2 type 1 and type 2 with the human genome
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
38475709
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
R01 AI148276
Genomics of Inflammatory Bowel Disease
CHILDREN'S HOSPITAL MEDICAL CENTER
Leah Claire Kottyan
U01 HG011172
Polygenic Risk Scores for Healthier African American Families
CHILDREN'S HOSPITAL MEDICAL CENTER
Leah Claire Kottyan
U19 AI070235
Epithelial Genes in Allergic Inflammation
CHILDREN'S HOSPITAL MEDICAL CENTER
Gurjit K. Khurana Hershey
P30 AR070549
Cincinnati Rheumatic Diseases Resource Center
CHILDREN'S HOSPITAL MEDICAL CENTER
Leah Claire Kottyan
R01 HG010730
Virus-driven human gene misregulation in disease
CHILDREN'S HOSPITAL MEDICAL CENTER
Matthew Tyson Weirauch
R01 GM055479
Biochemical and Computational Analysis of Notch signal transduction
CHILDREN'S HOSPITAL MEDICAL CENTER
Matthew Tyson Weirauch
U01 AI130830
Gene Regulation as a Foundation for Autoimmune Disease Prevention
CHILDREN'S HOSPITAL MEDICAL CENTER
Matthew Tyson Weirauch
R01 AR073228
Transcription Factor Genetics in Lupus
CHILDREN'S HOSPITAL MEDICAL CENTER
Leah Claire Kottyan
R01 AR073228
Transcription Factor Genetics in Lupus
CHILDREN'S HOSPITAL MEDICAL CENTER
Matthew Tyson Weirauch
R01 NS099068
Binding of Epstein Barr Virus EBNA2 Unifies Multiple Sclerosis Genetic Mechanisms
CHILDREN'S HOSPITAL MEDICAL CENTER
Leah Claire Kottyan
R01 NS099068
Binding of Epstein Barr Virus EBNA2 Unifies Multiple Sclerosis Genetic Mechanisms
CHILDREN'S HOSPITAL MEDICAL CENTER
Matthew Tyson Weirauch
R01 AI024717
Genetic Linkage in Lupus
CHILDREN'S HOSPITAL MEDICAL CENTER
Leah Claire Kottyan
R01 AI024717
Genetic Linkage in Lupus
CHILDREN'S HOSPITAL MEDICAL CENTER
Matthew Tyson Weirauch
Submission date
Oct 23, 2023
Last update date
Mar 20, 2024
Contact name
Matthew Weirauch
E-mail(s)
Matthew.Weirauch@cchmc.org
Organization name
Cincinnati Children's Hospital Medical Center
Department
Center for Autoimmune Genomics and Etiology (CAGE)
Street address
3333 Burnet Avenue
City
Cincinnati
State/province
Ohio
ZIP/Postal code
45229-3026
Country
USA
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (43)
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More...
GSM7854721
ATAC-seq: AG876 Replicate 1
GSM7854722
ATAC-seq: AG876 Replicate 2
GSM7854723
ATAC-seq: Jiyoye Replicate 1
GSM7854724
ATAC-seq: Jiyoye Replicate 2
GSM7854725
ATAC-seq: GM12878 Replicate 1
GSM7854726
ATAC-seq: GM12878 Replicate 2
GSM7854727
ATAC-seq: MutuIII Replicate 1
GSM7854728
ATAC-seq: MutuIII Replicate 2
GSM7854729
BATF ChIP-seq: AG876 Replicate 1
GSM7854730
BATF ChIP-seq: AG876 Replicate 2
GSM7854731
BATF ChIP-seq: Jiyoye Replicate 1
GSM7854732
BATF ChIP-seq: Jiyoye Replicate 2
GSM7854733
EBF1 ChIP-seq: AG876 Replicate 1
GSM7854734
EBF1 ChIP-seq: AG876 Replicate 2
GSM7854735
EBNA2 ChIP-seq: AG876 Replicate 1
GSM7854736
EBNA2 ChIP-seq: AG876 Replicate 2
GSM7854737
EBNA2 ChIP-seq: Jiyoye Replicate 1
GSM7854738
EBNA2 ChIP-seq: Jiyoye Replicate 2
GSM7854739
EBNA2 ChIP-seq: GM12878 Replicate 1
GSM7854740
EBNA2 ChIP-seq: GM12878 Replicate 2
GSM7854741
JUNB ChIP-seq: AG876 Replicate 1
GSM7854742
JUNB ChIP-seq: AG876 Replicate 2
GSM7854743
JUNB ChIP-seq: JIyoye Replicate 1
GSM7854744
JUNB ChIP-seq: JIyoye Replicate 2
GSM7854745
RBPJ ChIP-seq: AG876 Replicate 1
GSM7854746
RBPJ ChIP-seq: AG876 Replicate 2
GSM7854747
RBPJ ChIP-seq: Jiyoye Replicate 1
GSM7854748
RBPJ ChIP-seq: Jiyoye Replicate 2
GSM7854749
RBPJ ChIP-seq: GM12878 Replicate 1
GSM7854750
RBPJ ChIP-seq: GM12878 Replicate 2
GSM7854751
SPI1 ChIP-seq: AG876 Replicate 1
GSM7854752
SPI1 ChIP-seq: AG876 Replicate 2
GSM7854753
SPI1 ChIP-seq: Jiyoye Replicate 1
GSM7854754
SPI1 ChIP-seq: Jiyoye Replicate 2
GSM7854755
RNA-seq: AG876 Replicate 1
GSM7854756
RNA-seq: AG876 Replicate 2
GSM7854757
RNA-seq: AG876 Replicate 3
GSM7854758
RNA-seq: Jiyoye Replicate 1
GSM7854759
RNA-seq: Jiyoye Replicate 2
GSM7854760
RNA-seq: Jiyoye Replicate 3
GSM7854761
RNA-seq: GM12878 Replicate 1
GSM7854762
RNA-seq: GM12878 Replicate 2
GSM7854763
RNA-seq: GM12878 Replicate 3
This SuperSeries is composed of the following SubSeries:
GSE246059
Shared and distinct interactions of Epstein-Barr Nuclear Antigen 2 type 1 and type 2 with the human genome (ATAC-Seq)
GSE246060
Shared and distinct interactions of Epstein-Barr Nuclear Antigen 2 type 1 and type 2 with the human genome (ChIP-Seq)
GSE246061
Shared and distinct interactions of Epstein-Barr Nuclear Antigen 2 type 1 and type 2 with the human genome (RNA-Seq)
Relations
BioProject
PRJNA1031208
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE246062_RAW.tar
6.8 Gb
(http)
(custom)
TAR (of BW, NARROWPEAK, SF)
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