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Series GSE248751 Query DataSets for GSE248751
Status Public on Dec 01, 2023
Title EWSR1::ATF1 Orchestrates the Clear Cell Sarcoma Transcriptome in Human Tumors and A Mouse Genetic Model [RNA-Seq 1]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary A particular fusion protein that drives the rare, but deadly pediatric cancer, clear cell sarcoma. The fusion protein was expressed in mice, leading to the formation of similar tumors as those it causes in humans. This permitted the study of fusion protein function in these tumors.
 
Overall design To investigate the transcriptome Clear Cell Sarcoma, We performed RNA-seq on 5 frozen human CCS tumor, and used 3 human muscle samples from study GSE163434 (GSM4618168, GSM4618167 and GSM4618170) as control.
 
Contributor(s) Ozenberger BB, Li L, Jones KB
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 27, 2023
Last update date Dec 01, 2023
Contact name Li Li
E-mail(s) li.li@hci.utah.edu
Phone 3467174255
Organization name University of Utah
Street address 201 PRESIDENTS CIRCLE
City Salt Lake City
State/province Utah
ZIP/Postal code 84112
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (5)
GSM7919437 hCCS1
GSM7919438 hCCS2
GSM7919439 hCCS3
This SubSeries is part of SuperSeries:
GSE248753 EWSR1::ATF1 Orchestrates the Clear Cell Sarcoma Transcriptome in Human Tumors and A Mouse Genetic Model
Relations
BioProject PRJNA1045704

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE248751_human_CCS_counts.txt.gz 242.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

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