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Status |
Public on Nov 17, 2010 |
Title |
Renormalized GSE6089 by using the parametric method |
Sample organism |
Mus musculus |
Experiment type |
Third-party reanalysis Expression profiling by array
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Summary |
Each of the channel data was normalized and summarized by using SuperNORM data service (Skylight Biotech Inc.). http://www.super-norm.com/eng/index.html ABS_CALL: A, affected severely by noise; M, marginal; P, plausible.
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Overall design |
Both R and G signal data of samples in GSE6089, GSM140954-GSM140967, were parametrically normalized in channel-wise manner according to the three-parameter lognormal distribution method (Konishi, 2004 BMC Bioinformatics, 5, 5 http://www.biomedcentral.com/1471-2105/5/5). A pseudo data was then derived in a form of antilog of the z-scores; the center of the pseudo data was 256. The pseudo data, ABS_CALL, and the normalized data (z-scores) are presented in the matrix form.
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Contributor(s) |
Konishi T |
Citation missing |
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Submission date |
Oct 27, 2010 |
Last update date |
Mar 23, 2012 |
Contact name |
Tomokazu Konishi |
E-mail(s) |
konishi@akita-pu.ac.jp
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Phone |
+81-18-872-1603
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Organization name |
Akita Prefectural University
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Department |
Bioresource Sciences
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Lab |
Molecular Genetics
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Street address |
Shimoshinjyo Nishi
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City |
Akita |
State/province |
Akita |
ZIP/Postal code |
010-0195 |
Country |
Japan |
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This SubSeries is part of SuperSeries: |
GSE25410 |
The suitability of statistical tests according to characteristics in variation of expression microarray data |
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Relations |
Reanalysis of |
GSM140954 |
Reanalysis of |
GSM140955 |
Reanalysis of |
GSM140956 |
Reanalysis of |
GSM140957 |
Reanalysis of |
GSM140958 |
Reanalysis of |
GSM140959 |
Reanalysis of |
GSM140960 |
Reanalysis of |
GSM140961 |
Reanalysis of |
GSM140962 |
Reanalysis of |
GSM140963 |
Reanalysis of |
GSM140964 |
Reanalysis of |
GSM140965 |
Reanalysis of |
GSM140966 |
Reanalysis of |
GSM140967 |
BioProject |
PRJNA142719 |