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Series GSE249554 Query DataSets for GSE249554
Status Public on May 10, 2024
Title The neuroprotective effect of TGF-β1 on mechanically injured cortical murine neurons by reducing trauma-induced autophagy and apoptosis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Background Transforming growth factor β1 (TGF-β1) has a neuroprotective function in traumatic brain injury (TBI) through its anti-inflammatory and immunomodulatory properties. In our previous study, we found that TGF-β1 played a critical role in inhibiting apoptosis and increasing neuronal activity in murine cortical neurons following trauma. However, the precise mechanisms underlying the neuroprotective actions of TGF-β1 on the cortex require further investigation. Methods Thus, in this study, we were aimed to investigate the regulatory function of TGF-β1 on neuronal autophagy and apoptosis using an in vitro primary cortical neuron trauma-injury model. Results To establish the landscape of differentially expressed genes (DEGs) with or without TGF-β1 (10ng/ml) treatment for 24 hours, we performed RNA-sequencing. We observed significant enrichment of DEGs related to autophagy, apoptosis, and the lysosome pathway in trauma-injured cortical neurons. Additionally, transmission electron microscopy (TEM) confirmed the presence of autophagosomes as well as autophagolysosomes. Western blot analysis revealed upregulation of autophagy-related protein light chain 3 (LC3)-Ⅱ/LC3-Ⅰ, sequestosome 1 (SQSTM1)/p62, along with apoptosis-related protein Cleaved-caspase3 in trauma-injured primary cortical neurons. Furthermore, mechanically injured neurons showed an upregulation of lysosomal marker protein lysosomal marker protein (LAMP1) and lysosomal enzyme mature cathepsin D (mCTSD), but a decrease in the activity of CTSD enzyme. These results indicated that apoptosis was up-regulated in mechanically injured neurons at 24 hours, accompanied by lysosomal dysfunction and impaired autophagic flux. Notably, TGF-β1 significantly reversed these changes. Conclusions Therefore, our findings suggested that TGF-β1 exerted neuroprotective effects on mechanically injured neurons by reducing lysosomal dysfunction, decreasing the accumulation of autophagosomes and autophagolysosomes, and enhancing autophagic flux.
 
Overall design We were aimed to investigate the regulatory function of TGF-β1 on neuronal autophagy and apoptosis using an in vitro primary cortical neuron trauma-injury model.To establish the landscape of differentially expressed genes (DEGs) with or without TGF-β1 (10ng/ml) treatment for 24 hours, we performed RNA-sequencing.
Web link https://www.frontiersin.org/articles/10.3389/fncel.2024.1381279
 
Contributor(s) Li Y, Deng H
Citation(s) 38863498
Submission date Dec 06, 2023
Last update date Jun 28, 2024
Contact name Huixiong Deng
E-mail(s) hxdeng@stu.edu.cn
Phone +86 13592846285
Organization name Shantou University Medical College
Department Guangdong Provincial Key Laboratory of Infectious Diseases and Molecular Immunopathology
Street address Xinling 22 Rd
City Shantou
ZIP/Postal code 515041
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM7949983 Control1
GSM7949984 Control2
GSM7949985 Control3
Relations
BioProject PRJNA1049473

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE249554_gene_fpkm.txt.gz 3.6 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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