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Series GSE25216 Query DataSets for GSE25216
Status Public on Aug 04, 2011
Title Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.).
Organism Pinus taeda
Experiment type Expression profiling by array
Summary Global transcriptional analysis of loblolly pine (Pinus taeda L.) is challenging due to limited molecular tools. PtGen2, a 26,496 feature cDNA microarray, was fabricated and used to assess drought-induced gene expression in loblolly pine propagule roots. Statistical analysis of differential expression and weighted gene correlation network analysis were used to identify drought-responsive genes and further characterize the molecular basis of drought tolerance in loblolly pine.
 
Overall design Reference design. Three condition experiment, each compared to a common reference. Biological replicates: 4 well-watered (control), 4 drought-stressed, 4 drought-stressed + recovery. cDNA synthesized on three occassions (A, B, and C) and 2 replicates were performed for each synthesis for a total of 6 technical replicates for each biological replicate. 72 slides total
 
Contributor(s) Lorenz WW, Alba R, Yu Y, Bordeaux JM, Simoes M, Dean JF
Citation(s) 21609476
Submission date Nov 09, 2010
Last update date Aug 31, 2012
Contact name Adam W. Barb
E-mail(s) abarb@uga.edu
Organization name University of Georgia
Department Biochemistry and Molecular Biology
Lab B302A
Street address 180 E. Green Street
City Athens
State/province GA
ZIP/Postal code 30602
Country USA
 
Platforms (1)
GPL11184 Loblolly pine 26K cDNA array v2.0, PtGen2
Samples (144)
GSM619307 Drought Stress CCLONE 41201 Replicate 1 [DS vs. WW]
GSM619308 Drought Stress CCLONE 41201 Replicate 2 [DS vs. WW]
GSM619309 Drought Stress CCLONE 41201 Replicate 3 [DS vs. WW]
Relations
BioProject PRJNA134449

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25216.txt.gz 7.0 Mb (ftp)(http) TXT
GSE25216_41201_DR_1A.txt.gz 592.5 Kb (ftp)(http) TXT
GSE25216_41201_DR_2A.txt.gz 601.8 Kb (ftp)(http) TXT
GSE25216_41201_DR_3B.txt.gz 604.8 Kb (ftp)(http) TXT
GSE25216_41201_DR_4B.txt.gz 590.3 Kb (ftp)(http) TXT
GSE25216_41201_DR_5C.txt.gz 617.5 Kb (ftp)(http) TXT
GSE25216_41201_DR_6C.txt.gz 547.4 Kb (ftp)(http) TXT
GSE25216_41201_DS_1A.txt.gz 582.7 Kb (ftp)(http) TXT
GSE25216_41201_DS_2A.txt.gz 586.7 Kb (ftp)(http) TXT
GSE25216_41201_DS_3B.txt.gz 593.3 Kb (ftp)(http) TXT
GSE25216_41201_DS_4B.txt.gz 594.0 Kb (ftp)(http) TXT
GSE25216_41201_DS_5C.txt.gz 611.1 Kb (ftp)(http) TXT
GSE25216_41201_DS_6C.txt.gz 579.7 Kb (ftp)(http) TXT
GSE25216_41201_WW_1A.txt.gz 594.6 Kb (ftp)(http) TXT
GSE25216_41201_WW_2A.txt.gz 583.3 Kb (ftp)(http) TXT
GSE25216_41201_WW_3B.txt.gz 572.9 Kb (ftp)(http) TXT
GSE25216_41201_WW_4B.txt.gz 569.3 Kb (ftp)(http) TXT
GSE25216_41201_WW_5C.txt.gz 617.2 Kb (ftp)(http) TXT
GSE25216_41201_WW_6C.txt.gz 571.6 Kb (ftp)(http) TXT
GSE25216_41369_DR_1A.txt.gz 587.2 Kb (ftp)(http) TXT
GSE25216_41369_DR_2A.txt.gz 604.2 Kb (ftp)(http) TXT
GSE25216_41369_DR_3B.txt.gz 601.4 Kb (ftp)(http) TXT
GSE25216_41369_DR_4B.txt.gz 585.1 Kb (ftp)(http) TXT
GSE25216_41369_DR_5C.txt.gz 579.3 Kb (ftp)(http) TXT
GSE25216_41369_DR_6C.txt.gz 578.2 Kb (ftp)(http) TXT
GSE25216_41369_DS_1A.txt.gz 589.1 Kb (ftp)(http) TXT
GSE25216_41369_DS_2A.txt.gz 601.5 Kb (ftp)(http) TXT
GSE25216_41369_DS_3B.txt.gz 593.0 Kb (ftp)(http) TXT
GSE25216_41369_DS_4B.txt.gz 571.7 Kb (ftp)(http) TXT
GSE25216_41369_DS_5C.txt.gz 611.9 Kb (ftp)(http) TXT
GSE25216_41369_DS_6C.txt.gz 576.1 Kb (ftp)(http) TXT
GSE25216_41369_WW_1A.txt.gz 587.0 Kb (ftp)(http) TXT
GSE25216_41369_WW_2A.txt.gz 583.3 Kb (ftp)(http) TXT
GSE25216_41369_WW_3B.txt.gz 592.1 Kb (ftp)(http) TXT
GSE25216_41369_WW_4B.txt.gz 589.3 Kb (ftp)(http) TXT
GSE25216_41369_WW_5C.txt.gz 624.3 Kb (ftp)(http) TXT
GSE25216_41369_WW_6C.txt.gz 545.3 Kb (ftp)(http) TXT
GSE25216_44686_DR_1A.txt.gz 573.2 Kb (ftp)(http) TXT
GSE25216_44686_DR_2A.txt.gz 576.5 Kb (ftp)(http) TXT
GSE25216_44686_DR_3B.txt.gz 593.4 Kb (ftp)(http) TXT
GSE25216_44686_DR_4B.txt.gz 596.8 Kb (ftp)(http) TXT
GSE25216_44686_DR_5C.txt.gz 594.2 Kb (ftp)(http) TXT
GSE25216_44686_DR_6C.txt.gz 567.6 Kb (ftp)(http) TXT
GSE25216_44686_DS_1A.txt.gz 590.1 Kb (ftp)(http) TXT
GSE25216_44686_DS_2A.txt.gz 603.1 Kb (ftp)(http) TXT
GSE25216_44686_DS_3B.txt.gz 607.2 Kb (ftp)(http) TXT
GSE25216_44686_DS_4B.txt.gz 591.6 Kb (ftp)(http) TXT
GSE25216_44686_DS_5C.txt.gz 577.1 Kb (ftp)(http) TXT
GSE25216_44686_DS_6C.txt.gz 566.7 Kb (ftp)(http) TXT
GSE25216_44686_WW_1A.txt.gz 554.6 Kb (ftp)(http) TXT
GSE25216_44686_WW_2A.txt.gz 608.1 Kb (ftp)(http) TXT
GSE25216_44686_WW_3B.txt.gz 598.2 Kb (ftp)(http) TXT
GSE25216_44686_WW_4B.txt.gz 588.3 Kb (ftp)(http) TXT
GSE25216_44686_WW_5C.txt.gz 586.0 Kb (ftp)(http) TXT
GSE25216_44686_WW_6C.txt.gz 585.4 Kb (ftp)(http) TXT
GSE25216_45226_DR_1A.txt.gz 569.7 Kb (ftp)(http) TXT
GSE25216_45226_DR_2A.txt.gz 588.0 Kb (ftp)(http) TXT
GSE25216_45226_DR_3B.txt.gz 589.0 Kb (ftp)(http) TXT
GSE25216_45226_DR_4B.txt.gz 576.6 Kb (ftp)(http) TXT
GSE25216_45226_DR_5C.txt.gz 576.4 Kb (ftp)(http) TXT
GSE25216_45226_DR_6C.txt.gz 576.2 Kb (ftp)(http) TXT
GSE25216_45226_DS_1A.txt.gz 573.8 Kb (ftp)(http) TXT
GSE25216_45226_DS_2A.txt.gz 601.9 Kb (ftp)(http) TXT
GSE25216_45226_DS_3B.txt.gz 599.5 Kb (ftp)(http) TXT
GSE25216_45226_DS_4B.txt.gz 597.5 Kb (ftp)(http) TXT
GSE25216_45226_DS_5C.txt.gz 575.8 Kb (ftp)(http) TXT
GSE25216_45226_DS_6C.txt.gz 584.3 Kb (ftp)(http) TXT
GSE25216_45226_WW_1A.txt.gz 585.0 Kb (ftp)(http) TXT
GSE25216_45226_WW_2A.txt.gz 592.8 Kb (ftp)(http) TXT
GSE25216_45226_WW_3B.txt.gz 581.8 Kb (ftp)(http) TXT
GSE25216_45226_WW_4B.txt.gz 584.1 Kb (ftp)(http) TXT
GSE25216_45226_WW_5C.txt.gz 604.5 Kb (ftp)(http) TXT
GSE25216_45226_WW_6C.txt.gz 576.3 Kb (ftp)(http) TXT
GSE25216_RAW.tar 5.5 Mb (http)(custom) TAR
Processed data included within Sample table
Processed data are available on Series record

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